Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03652 ATGGACTTCGATCACCACCTCACGGAGCTTTCCGCTTCCTCGCCATGCATTCCCTCCGGCGAGGATTTCCATTTCTACTTCAAATTGACCGAGTTCCGACGCCCGATCGAAGAAATAGCCCGGAGGACACAGTCGATGCTCGAGATAATCGGTTCCGCGGAGAATATTTGGGGCAGAGGCTCGGTATTTCCCGCTGACATCGACGATGCATACGAGTGGCTTGTGAACGCGAACGAAGACGTTTTGGAGCTGGTTGATGAGTTGGTGGAAGAGTTGCGGAGGATTAAGAGGGAGAAGGGACAGGATATTGAAAACGAGTTGGAGGCAAAGACGAAAGTGCCGTTTCATATACCGACGATTAGGAAGCCTCAGTATGCGTACAATATTGTGGTTGATAATGCAAACAAGCCTTTTGAGCATGTCTTGTTGGAGAAGAGTGAAGATGGTCAGCGGTTTATTCATCCACTGGAGAAATTATCTGTTTTGGATTTTGTTGATAAAGAAAATATCGAGAATCTTGTGCCAGTAAAGCCTCCCTCAGTAGAATGCACCCCTTTCAAGCTTGTGGAGGAAGTCAAAGGATTGAAGGAGTTGGCTACTAAGCTGTCTTCTTTGAATGAATTTGCGGTGGATTTGGAGCATAATCATTATCGGTCTTTCCAAGGTTTGACTTGCTTGATGCAAATCTCAACCAGGACTGAAGATTTTGTCATAGACACTCTGAAGGTTCGTAATCATGTTGGGCCATATCTGAGAGAAGTCTTCAAGGACCCTACCAAGAAAAAGGTCATGCATGGAGCAGATAGAGATATTGTGTGGCTGCAACGGGATTTTGGCATTTATGTTTGTAATATGTTTGATACTGGCCAGGCTTCTAGAGTGTTAAAGTTGGAGAGATATAGTCTGCAATATCTTTTGCAACACTACTGTGGGGTTACTGCAAACAAGGAGTATGCTGTCTTCACTTTTTGGACTTATCTGCTGCTTCAAGTATACCAGAATGCAGATTGGAGATTACGCCCTCTTCCCGATGTGATGCTGAGTGTGGTAAGATTTATTTGTGGTCACATAAGAAAGGACGATATATGGAATGATCGTTATATCAGGATTGAGGAGATATTGGCATGTGGTTTGGACACGTACAAAGAAGGCCATTGGAGGCTCCAACGAGGAGAGAAAGGAGTGGAAGGAGCTGCCACGAGGGTGTATTTGGAAGTTCTTGGACAGAGTTATTCCTGCACGAATTCCGATCTCAAATATGGCAGAGAGGATACCCACTATCTCCTTTATATACATGATGTAATGAGGATCAAGTTGTTTACATTGTCTAAGGAGTCTGAAGGTTGTCATAATTCTCTACTGGAGGTTTACAAGCGCAGTTATGATGTATGCATGCAGCTATATGAGAAGGACCTGCTGACAGAAACATCGTACCTTCACATATATGGGTTGCGAGGGGCTGGTTTTAATGCTCAGCAGCTTGCAGTTGTTTCAGCGCTCTGTGAATGGCGTGATGGTCTTGCACGTGCAGACGATGAGGGGCCTGGCTATGTATTGCCAAATAAAATTATTCTTGAAATCGCTAAGCAGATGCCTGTCATTATAAGCAATTTAAGGCGAATAGTAGGAAGGTCAAAGCTCCCGTATGTTGAACGAAGCCTTGATGTCATTGTCAACATTGTTAGACATTCTATGCAAAATGCTTCTTCCTTTGAAGAGGCTGCACTACGTTTGAAAGAAGAACATGCAGCAAGTTTGTCAAATGTAGTACCGGTTAAGGATGGATCTGAAGTACCTCAGACGCTAAACTTAAAGGTTGGATGTGCAGCAACAGGAAGCATTGGAATTGAAAATGACATCTGTGATGATCTCTCAGAGAATTGTTTATTTTCTTCTGACTTGGAGGAGTGTCTCACTTCAGATTTCCCAAGGGCCAGTCCCACTATTCCAGAGAATAATCAAGATGCTGCAGACGTTATTGCACTCTCTACAGGGAAGGGCAATGGAGAGGTGCTAAAACTGCCTACTGGTTCTGTTGATGCGCCACTGCTGGGCAACTCTACTTCAAAATGGAAGCCCAATCCTATTAAAGAGGTCAAGGAGGAGGTTGAGCTAGGACAAATTAAATCGTCGGACAATGTTCCATCCCTCTTAGTTTTGGACTATAGTGAGAAGGCAAAACTAGTTGTAGGAACTCCAAGTGTAGCATCGGAAACATCAGACCTACAGGAGAAACCTGCTTCAGGTTCAGGTTCAGGTTCTACCTCCACCAACCACTGTTGGGATTGTAACGATAATCTCTGA 2304 0.4418 MDFDHHLTELSASSPCIPSGEDFHFYFKLTEFRRPIEEIARRTQSMLEIIGSAENIWGRGSVFPADIDDAYEWLVNANEDVLELVDELVEELRRIKREKGQDIENELEAKTKVPFHIPTIRKPQYAYNIVVDNANKPFEHVLLEKSEDGQRFIHPLEKLSVLDFVDKENIENLVPVKPPSVECTPFKLVEEVKGLKELATKLSSLNEFAVDLEHNHYRSFQGLTCLMQISTRTEDFVIDTLKVRNHVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYVCNMFDTGQASRVLKLERYSLQYLLQHYCGVTANKEYAVFTFWTYLLLQVYQNADWRLRPLPDVMLSVVRFICGHIRKDDIWNDRYIRIEEILACGLDTYKEGHWRLQRGEKGVEGAATRVYLEVLGQSYSCTNSDLKYGREDTHYLLYIHDVMRIKLFTLSKESEGCHNSLLEVYKRSYDVCMQLYEKDLLTETSYLHIYGLRGAGFNAQQLAVVSALCEWRDGLARADDEGPGYVLPNKIILEIAKQMPVIISNLRRIVGRSKLPYVERSLDVIVNIVRHSMQNASSFEEAALRLKEEHAASLSNVVPVKDGSEVPQTLNLKVGCAATGSIGIENDICDDLSENCLFSSDLEECLTSDFPRASPTIPENNQDAADVIALSTGKGNGEVLKLPTGSVDAPLLGNSTSKWKPNPIKEVKEEVELGQIKSSDNVPSLLVLDYSEKAKLVVGTPSVASETSDLQEKPASGSGSGSTSTNHCWDCNDNL 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03652 767 SUPERFAMILY Ribonuclease H-like 120 347 IPR012337 -
Spst1g03652 767 ProSiteProfiles PUA domain profile. 90 110 - -
Spst1g03652 767 ProSiteProfiles HRDC domain profile. 490 571 IPR002121 GO:0003676
Spst1g03652 767 Gene3D - 113 478 IPR036397 GO:0003676
Spst1g03652 767 SMART hrdc7 490 570 IPR002121 GO:0003676
Spst1g03652 767 SUPERFAMILY HRDC-like 474 567 IPR010997 GO:0000166|GO:0044237
Spst1g03652 767 MobiDBLite consensus disorder prediction 734 767 - -
Spst1g03652 767 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 5 351 IPR045092 GO:0000175|GO:0000467
Spst1g03652 767 Pfam 3'-5' exonuclease 189 318 IPR002562 GO:0003676|GO:0006139|GO:0008408
Spst1g03652 767 Coils Coil 78 105 - -
Spst1g03652 767 Gene3D HRDC domain 479 573 IPR044876 -
Spst1g03652 767 SMART 35exoneu6 186 362 IPR002562 GO:0003676|GO:0006139|GO:0008408
Spst1g03652 767 Pfam HRDC domain 493 546 IPR002121 GO:0003676
Spst1g03652 767 FunFam Putative exosome component 10 477 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03652 Spst-Chr1 46163331 46188787 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03652 K12591 - vum:124834852 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03652 1 46163331 46188787 Spst1g03652 1 46163331 46188787 ECH