Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03637 ATGACGATGTACAACCCAACGGCAGAGAGCAGCACGGTTCTGACACCTCTGACGGGTTCATTGTCAGTGATGGACAGAGTGAATGGATCACACAATTTTGTGTTGAAGGGTTACTCTCTAACGAAGGGAATGGGCACTGGAAAATTCATTGCAAGCAAGACATTCACTGTGGGAGGGCATCAGTGGGCCATTTATTTCTACCCTGAAGGGAAGGTCCCTAGTGAGAATGGTGTTTATGTTTCCGTCTTTGTCGCACTTGTTTCTGAGGGCACCGATGTTCGTGCACTGTTCGAACTCAAGTTGCTCGACCAGAGCGACAAAGGGACTGACTTGGTTTATACTCACTTCGGTCGCAGCCTCGAGAATGGCCCTTACACTATCAAAACCCGTGGCTGCATTTGGGGATATAAGCGGTTTATAAAACGAAAAGACCTCGAGGCATCAACTTCTCTCAAGGACGATTGCTTGAAGATCGATTGCACTGTTGGTGTTCTGGTGGTGTCATCGTCTAGTGATTCTTCTATGTTAAACGCAATACATGTTCCTGAATCTGACATGGGGGCAGATTTGGGGATGATGTTAGATTATGAGGAATTATGTGATGTTACTTTCTCCCTTGGTGGGGAAAGATTTCGTGCACATAAGCTTATTTTGGCTACTCGGTCATCAGTGTTTGAAACCTGGCTTTCTAATGGGGTTGGCAACGATGACAAGGAGATAGTTCTCACTGACATTGAGCATAAAATTTTCAAGGCTTTGCTTCATTTTATATATACAGACACTCTAATGGAAGATGAAGATCTCTTTATGTGGGAATCTTCGTCCTTGTTATCGGTATCTGAATCATTTCCGGCAAAGTTATTAGCTGCAGCAGAAAAGTATGACTTGCCACGACTGAAGATGATGTGTGAGTCGGTACTTTGTAAAGACATATCTATAGATTCTGTTGCATATATTCTGGTTGTTGCTGATCGTTATCGTGCTACTCAGTTGATGGAGACTGTCACGAAATCTGATAGTTTCCAGTATCTTAGGAAAAAATGGCTATTGCTACACGAGGAGCTGCTAAACAGTGTGGTTGACTTAGACAATTTTATTGTGCACGTCCAATCTTCTGAGGATGGTTACACCAATGATAGGAAACAACCAACCTTAGAAAGAGGTGAAAGTTCAAGGGTTCACCTTTCTGATGATGAGTTGATTAAGACACAGATCTATTCATGA 1224 0.4297 MTMYNPTAESSTVLTPLTGSLSVMDRVNGSHNFVLKGYSLTKGMGTGKFIASKTFTVGGHQWAIYFYPEGKVPSENGVYVSVFVALVSEGTDVRALFELKLLDQSDKGTDLVYTHFGRSLENGPYTIKTRGCIWGYKRFIKRKDLEASTSLKDDCLKIDCTVGVLVVSSSSDSSMLNAIHVPESDMGADLGMMLDYEELCDVTFSLGGERFRAHKLILATRSSVFETWLSNGVGNDDKEIVLTDIEHKIFKALLHFIYTDTLMEDEDLFMWESSSLLSVSESFPAKLLAAAEKYDLPRLKMMCESVLCKDISIDSVAYILVVADRYRATQLMETVTKSDSFQYLRKKWLLLHEELLNSVVDLDNFIVHVQSSEDGYTNDRKQPTLERGESSRVHLSDDELIKTQIYS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03637 407 CDD MATH 29 161 IPR002083 GO:0005515
Spst1g03637 407 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 15 337 IPR045005 GO:0016567
Spst1g03637 407 SMART BTB_4 200 311 IPR000210 GO:0005515
Spst1g03637 407 SUPERFAMILY POZ domain 179 309 IPR011333 -
Spst1g03637 407 Gene3D Potassium Channel Kv1.1; Chain A 166 338 IPR011333 -
Spst1g03637 407 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 27 165 IPR008974 GO:0005515
Spst1g03637 407 ProSiteProfiles MATH/TRAF domain profile. 28 162 IPR002083 GO:0005515
Spst1g03637 407 SUPERFAMILY TRAF domain-like 26 166 - -
Spst1g03637 407 SMART math_3 33 145 IPR002083 GO:0005515
Spst1g03637 407 ProSiteProfiles BTB domain profile. 200 266 IPR000210 GO:0005515
Spst1g03637 407 Pfam BTB/POZ domain 193 309 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03637 Spst-Chr1 45949031 45950659 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03637 K10523 - gmx:100809683 461.84