Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03631 ATGCTAGCATGTCCTAGCAGCTCCGTCCATGGCCTCGCCACGCTTCAACGGCATTCCCAACCATCTCACTTCCTCCTCTCCAAGCCTCTCTTTTTCTCTCCCTCCCCTCGCCTCGCCGCTTCCCGCAAATGCAACATCCGCTCGCTTCCTTCCGGAAGGAACAGCCGCCGCTCCGTCGTCAGAGCTTCTACGGACTCGCCGGAGGCGTTGAAGTCCGTCGTCGGCGGCGACGGTGGTGTACTGCAACCATATTCCGTGAAGATTCCTGTTGGTGATAGACATATTTTGGTTGAGACTGGTCATATAGGAAGACAGGCAAGTGGTTCTGTTACAGTTACAGATGGAGAGACTATTTTGTATACAACTGTTTGCTTGGATGATGTTCCCAGTGAACCATCTGACTTTTTCCCTCTTTCTGTTAATTATCAAGAGCGTTTTTCAGCGGCTGGTCGCACTAGGTTAATTGATAGGCCTCTACGTCCTATTATGCCCAAGGGATTCTATCATGAAACTCAAATATTATCTTGGGTTTTGAGCTATGATGGATTGCACTCCCCTGATTCTCTGGCTGTCACTGCAGCTGGTATAGCAGTTGCACTTTCAGAAGTGCCAATGTCAAAAGCAGTTGCTGGGGTCCGTGTTGGTCTTGTTGGTGATAAGTATATAGTAAATCCTACAATTAAAGAGATGGAACACTCGGAGTTGGACCTCTTGCTGGCTGGCACAGATAGTGCAATATTGATGATAGAGGGCTATAGCAATTTTCTTCCAGAAGAACAGTTACTTAAAGCTGTCGAAGTTGGTCAGGATGCAGTGCGAGCGATCTGTAATGAGGTAGAAGCTTTGGTTAAGAAGTGTGGGAAGCCAAAGATGTTGGATGCCATCAAGTTACCTCCGCCTGAACTTTATGAACATGTTGAATTCCTCGATATGATTGATGTTTGTGAATCAGTCATTGGGAAGATGCAGATCAACAATCGGTTTGATGAATATCACTGTGGAAAAACTGTAGCAATTATGGCTGCTACTCTAAATATAAAAATGGCAATGAAGACTGTTGGCTATGATGAAGACAAACGTGGCAATGAAGGCCACAGAAGTTGGATAGAAACTTACGTGGGTGGGAATGTGCAGAAAATTGCTGGTGATGAGATAGTAAAAGTTCTTCAAATTAGTAACAAAATACCAAGAAGAAAAGCCCTTTCATCATTAGAAGAAAAGGTTTTGAAGATACTCACAGAAAATGGGTTTGTCACAAATGAGTTGAAATTGAGGAGTAATTCTGAGAACATTGGAGAGATTCTTGAGGATGAGGACGAAGACGAGGAAGTAATTGTTGATGGTGAAGTTGACGAAGGTGATGTTCATATAAAGCTTACTTCACACAAACCAGCACTTTTATTTTCTGAGGTAGATGTCAAGTTGGTATTTAAGGAAGTTACATCCAAATTTTTGAGGAAGCGCATAGTACAGGGGGGGAAAAGGAGTGATGGGCGAACACCTAATGGAATACGACCAATCAACTCTAGATGTGGCCTATTACCCAGAGCTCATGGAAGTGCTCTTTTTACAAGAGGCGAAACACAGTCGTTGGCTGTGGTTACACTTGGAGATAAACAAATGGCACAAAGAATAGATTGTCTTGATGGTGATGATGAATTGAAGAGGTTCTATTTGCAGTATTCATTTCCTCCTTCATGTGTTGGGGAAGTTGGCCGGATTGGTGCCCCGAGTAGAAGAGAAATTGGTCATGGGATGCTTGCTGAGAGATCCCTTGAACGAATTTTGCCTTCTGATAATGATTTTCCTTACACTATACGTGTAGAGAGTACTATCACAGAAAGCAATGGCTCTTCAAGCATGGCTTCTGTTTGTGGAGCTTGCTTAGCATTACAGGATGCTGGTGTTCCTATTAAGTGCTCTATTGCTGGAATTGCAATGGGTATGGTACTGGACACCAAGGAATTTGGTGGAGATGGAACTCCACTTATTCTGTCTGACATAATTGGATCTGAAGATGCATCTGGAGATATGGATTTCAAGGTTGCTGGCAATGAAGATGGCGTAACTGCATTTCAAATGGACATTAAGGTGGGTGGAGTCACTTTGCCCATCATGAGAAAGGCACTCCTACAAGCAAGAGATGGCAGGAAGCATATACTTGAAGCAATGATGAATTGCTCACCTCCTCCAGCAAATAAGCTTTCAAAATATGCTCCTCTGATTCATGTTATGAAGGTGAAACCGGATAGAGTAAATCTTATAATTGGTTCTGGTGGGAAAAAAGTCAAGAGCATTATTGAGGAATCTGGAGTAGAAGCTATTGATGCAGACGATAACGGCATCGTGAAAATATTTGCAAAAGATTTGCTTAGTTTAGAGAAATCTAAGGCTATCATCAGTAGTTTGGCGATGGTTCCAAGTGTTGGTGATATATACAGAAACTGTGAAATCAAATCAATAGCTTCATATGGAGTTTTTGTAGAGATAGCACCTGGACGAGAGGGACTTTGTCATATCAGTGAACTGAGTTCAGGATGGCTACCTAAGGCAGAAGATGTGTTCAAAGTGGGAGATCGCATTGATGTAAAGCTTATAGAGATAAATGAAAAGGGCCAGCTGCGCCTGAGTTACCGAGCACTGCTTCCTGATACAGATGCCGACAACTCAAATGTTAAGCCTACTGGTGAACTAGCTGACGACACAGAAACTTCACCAAAATCACCTGAAAAGTCTAAAGATAAATCTAGCACTCCCAAAATCACAGCCTCTTCTAAAAGGAGTTCAGAGGATGATTCTGTACTTCCATCTAAAAAGTTTATCAAGAGATTGGTCAGCTCTTCCCAGGATAAGCCCTTCACTAACAAAGACAAAACAAAGAAGAGTAGCAACAAAGCAGTTGGTAGTGTGTCTGGCAAAGATGAAAGCAGCTTGGTTAGTGGAGAGGCGTAA 2952 0.4292 MLACPSSSVHGLATLQRHSQPSHFLLSKPLFFSPSPRLAASRKCNIRSLPSGRNSRRSVVRASTDSPEALKSVVGGDGGVLQPYSVKIPVGDRHILVETGHIGRQASGSVTVTDGETILYTTVCLDDVPSEPSDFFPLSVNYQERFSAAGRTRLIDRPLRPIMPKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPMSKAVAGVRVGLVGDKYIVNPTIKEMEHSELDLLLAGTDSAILMIEGYSNFLPEEQLLKAVEVGQDAVRAICNEVEALVKKCGKPKMLDAIKLPPPELYEHVEFLDMIDVCESVIGKMQINNRFDEYHCGKTVAIMAATLNIKMAMKTVGYDEDKRGNEGHRSWIETYVGGNVQKIAGDEIVKVLQISNKIPRRKALSSLEEKVLKILTENGFVTNELKLRSNSENIGEILEDEDEDEEVIVDGEVDEGDVHIKLTSHKPALLFSEVDVKLVFKEVTSKFLRKRIVQGGKRSDGRTPNGIRPINSRCGLLPRAHGSALFTRGETQSLAVVTLGDKQMAQRIDCLDGDDELKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERSLERILPSDNDFPYTIRVESTITESNGSSSMASVCGACLALQDAGVPIKCSIAGIAMGMVLDTKEFGGDGTPLILSDIIGSEDASGDMDFKVAGNEDGVTAFQMDIKVGGVTLPIMRKALLQARDGRKHILEAMMNCSPPPANKLSKYAPLIHVMKVKPDRVNLIIGSGGKKVKSIIEESGVEAIDADDNGIVKIFAKDLLSLEKSKAIISSLAMVPSVGDIYRNCEIKSIASYGVFVEIAPGREGLCHISELSSGWLPKAEDVFKVGDRIDVKLIEINEKGQLRLSYRALLPDTDADNSNVKPTGELADDTETSPKSPEKSKDKSSTPKITASSKRSSEDDSVLPSKKFIKRLVSSSQDKPFTNKDKTKKSSNKAVGSVSGKDESSLVSGEA 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03631 983 CDD S1_PNPase 810 878 - -
Spst1g03631 983 Pfam KH domain 744 800 IPR004088 GO:0003723
Spst1g03631 983 CDD KH-I_PNPase 738 807 - -
Spst1g03631 983 ProSiteProfiles S1 domain profile. 810 879 IPR003029 GO:0003676
Spst1g03631 983 Gene3D K Homology domain, type 1 737 809 IPR036612 GO:0003723
Spst1g03631 983 Pfam 3' exoribonuclease family, domain 2 208 270 IPR015847 -
Spst1g03631 983 Gene3D - 448 736 IPR027408 -
Spst1g03631 983 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 366 923 IPR012162 GO:0003723|GO:0004654|GO:0006402
Spst1g03631 983 FunFam Polyribonucleotide nucleotidyltransferase 1, chloroplastic 810 881 - -
Spst1g03631 983 FunFam Polyribonucleotide nucleotidyltransferase 737 806 - -
Spst1g03631 983 FunFam Polyribonucleotide nucleotidyltransferase 82 293 - -
Spst1g03631 983 NCBIfam polyribonucleotide nucleotidyltransferase 463 880 IPR012162 GO:0003723|GO:0004654|GO:0006402
Spst1g03631 983 ProSiteProfiles Type-1 KH domain profile. 740 800 - -
Spst1g03631 983 MobiDBLite consensus disorder prediction 964 983 - -
Spst1g03631 983 SUPERFAMILY Nucleic acid-binding proteins 805 884 IPR012340 -
Spst1g03631 983 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 743 828 IPR036612 GO:0003723
Spst1g03631 983 MobiDBLite consensus disorder prediction 903 917 - -
Spst1g03631 983 SUPERFAMILY Ribosomal protein S5 domain 2-like 84 204 IPR020568 -
Spst1g03631 983 SUPERFAMILY Ribonuclease PH domain 2-like 206 291 IPR036345 -
Spst1g03631 983 Gene3D - 75 289 IPR027408 -
Spst1g03631 983 SMART S1_6 808 879 IPR022967 -
Spst1g03631 983 Gene3D - 810 881 IPR012340 -
Spst1g03631 983 SMART kh_6 739 805 IPR004087 GO:0003676
Spst1g03631 983 MobiDBLite consensus disorder prediction 888 902 - -
Spst1g03631 983 Pfam S1 RNA binding domain 817 879 IPR003029 GO:0003676
Spst1g03631 983 FunFam Polyribonucleotide nucleotidyltransferase 441 736 - -
Spst1g03631 983 MobiDBLite consensus disorder prediction 885 983 - -
Spst1g03631 983 Pfam 3' exoribonuclease family, domain 1 504 637 IPR001247 -
Spst1g03631 983 Pfam 3' exoribonuclease family, domain 1 93 204 IPR001247 -
Spst1g03631 983 CDD RNase_PH_PNPase_2 504 731 - -
Spst1g03631 983 SUPERFAMILY Ribonuclease PH domain 2-like 631 732 IPR036345 -
Spst1g03631 983 SUPERFAMILY Ribosomal protein S5 domain 2-like 477 649 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03631 Spst-Chr1 45824852 45876462 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03631 K00962 - egt:105965840 1084.71