Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03626 ATGTTGAACAATTCTAGTACCACCACACAGTCACAGATCTTCCAAATCCAAGCACAAGTTCCACAGCAAAGGCTTCCTCAATTCACAGTCCCCATCAAGGCACAAGTTTCGAACTTTCCCAATAGAACAACAGTGGCGGGTCAAACAGCAAGAAGGGTTTTCCAGATTCTCTTCTACTTGCATTTGTTCCTAGTTGCAGTCTTGGTGATCTTTCTCGTCATATATGGTTTTGTCTCTGACGCTCACACCCACCATTTCCACCCTCAGAAATGGTACCCCCCACTTCTAGCTTCTACAGCATGTGCTGGAATTGTTGGTTTCACATGGCAATGCATCACTGCACGCCACTCCACAAGGGTAGTCAGGTTAGCGTTTTGGCTGACTCCCCTGCTAACATGTGCAATGGGAATTATGTTTATATGCATTGGCACTGCAGTAAGTCTGGCAGTTGGTATAATTGCTTTGGTTTCTGCGTTAATCCAATCACTCTATGGTTGTTGGGCCAGTCCCAGATTTGAATATGGCACAAAAATCTTGTCAGTTTCAATAGCTTTTCCTCCTAACAAAACCCAAGGGCTAACCCTTTATTCAATCCTCATTGGCATCCTTTACTGCTGTTTCCTGGTGGCTGGGATTGGAGGAGCTAGAGCCACTGAAAACAGAACCAAACTAGCAGCTTTTTTCATCTTCTTGATGTTGCTGAGCCTAGGATGGACTATGCAGTTTCTGAAGAATGCAATGTATGTCACTATTTCAAGGGTCAAGTATATGCATTTTTCTGGAGGAGTTGACATGGACACTAGAGTTGCATTTTGTGACACAATCAAGCACTTAACTGGATGTGTTTCCATAGGCTCCATCTTGGTTCCCATCATCGTGCTTTTCCGTGGTTTTGCACGAACCACGAGTCTGGTTGGAGGAGATACAGATGAGTTCATGTTTTCCTGTGTCAGTTGCTATATGGGGATTGCATCTCTTCTTGTGATCCGTGGAAATAGGTGGGGTTTTGTGCACGTTGGAGTTTATAACAAAGGGTTTGTGCAGGCATCATCTGATACTTGGGAGATGTTCATTAGGGTTGGATTGTTGGAACTCATAGACTTGGATCTCACTGGAGCATTCTGTTTCCTTAGTGGGGTTGGAACAGGAGCAATATGTAGTCTAGTGAGTGGAGTTTGGAGTCTTGTGATGCACAAGAGCTATGCCACAGAACTGTCCATTTATGCTTTTCTTATTGGCTATTTCATGTGTCGATTGGCCATTGCATGGGCACAAGCTTGTGTTTCAGCTTACTATGTTGCCTACGCAGAAAATCCACAGAGCACTCATTTTGACTCCACCATTCCAGTACGCTTGGAGCAGCTTAATAGATCTCAAGCTCTGCAAATATTCAGAGCTAATAATTTCAGCCGAGTCTAA 1419 0.4405 MLNNSSTTTQSQIFQIQAQVPQQRLPQFTVPIKAQVSNFPNRTTVAGQTARRVFQILFYLHLFLVAVLVIFLVIYGFVSDAHTHHFHPQKWYPPLLASTACAGIVGFTWQCITARHSTRVVRLAFWLTPLLTCAMGIMFICIGTAVSLAVGIIALVSALIQSLYGCWASPRFEYGTKILSVSIAFPPNKTQGLTLYSILIGILYCCFLVAGIGGARATENRTKLAAFFIFLMLLSLGWTMQFLKNAMYVTISRVKYMHFSGGVDMDTRVAFCDTIKHLTGCVSIGSILVPIIVLFRGFARTTSLVGGDTDEFMFSCVSCYMGIASLLVIRGNRWGFVHVGVYNKGFVQASSDTWEMFIRVGLLELIDLDLTGAFCFLSGVGTGAICSLVSGVWSLVMHKSYATELSIYAFLIGYFMCRLAIAWAQACVSAYYVAYAENPQSTHFDSTIPVRLEQLNRSQALQIFRANNFSRV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03626 472 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 43 457 IPR007603 GO:0022857|GO:0055085
Spst1g03626 472 Pfam Plasma-membrane choline transporter 148 439 IPR007603 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03626 Spst-Chr1 45756366 45758159 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03626 - - var:108328067 859.751