Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03608 ATGGGTGGCGTGGCCCCAAGGTTCCTCTTCCTCCTCGCCACTCCCCTCCCTCTTCTCCGCCGCCACCACCACCACCGCAACCTCTTTCTCCTCTCTTCCCATTCCCTCCGTCTCTCTTCTTCTCCTTCTTCACTCTCTTTCTCATCTTCACCTCTCCCACTCAAACTCAGAGCTTCCCAAGCTTCTTCTCGCTCCTCCTCTCCATGGCCAGAGTGGTCCTCTTTCCTCTCTCACATCTCCTCAGCCGGCTACCTCTCTTCCCTCCCCGACGATGCCTTCGCCACCGTCGCCGGACACCTCTCTCACTCCTTCCTCCGCGACGCCACCGCTTGCTTGGCCTTCGCGCGCGACCGCCCTAACCTTCTCAGGTTGCTTTCTACGAGAGACATTGCGACCGTAGTTGAGCACGGCTCCCCCTTTCTCTTCCGCGACGCCGACGATTCCATCAGGAAGATGAAGTCCTTTCTGTCCAACGGTGACGCCAATGTGTTGGAAACTGATAGAGCAAATACGGTTGACCTAATGAAGTTTTTGCTGAGTTATGCAAGTGATCCATTTGTCCCTTCAGAAGGGAACAGTCTCAATAAAAGAAATCTTATTGAGTCATCTGTCAGAAATCTCTTTGGTGAACTTTTCAAGCTGAGTTATAGTGCGCCTCCACCAAACTCTTTTGATTCAGTGCAAAGTCAAATGAGTGGAAGATTCGGACAAACAAGGCCTCCTGGACAAAAAATTGAAATGAAGAGGGGTGATTGGATTTGCCCAAGGTGTAATTTCATGAATTTTGCACGAAATATCAAATGTCTTGAGTGCGAAGAAGCAAGGCCACAAAGGCAACTTGCTGGAGGTGAATGGGAATGTCCTCAGTGTGATTTCTATAACTACGGGAGGAACATGAATTGCTTGAGGTGTGATTGCAAGCGACCTGGACAAATATCTTTGGGTGCCCCCAATACCATGTCAAATATGGAGTATGAAAATGGAAACAATCCTAATACATCAGATTTTGATGCTAGGTTAGCTGCCAATGAAGAAAAGGCACAGCGTTGGTTTAGCAAGGTTTCTCAACAAGACAGCAGTGCTGATATTAACAGTGTGATAGCAGATGAAGATTTTCCTGAAATAATGCCACTGAGGAAAGGAGTAAATAGATTTGTCGTGAGTACGAGAAAGATTCCACTGGAGCGGAGGTTGGCTGATGCTCGATTCAAGAGAAACTTGTCCAATAATGATATTCCTGGGATTGAGGATTTTAAAGCTGGCGAGCCAATCAAGTTCCATGACAATCTTGATGACATGCCAGGTCATTCAGCTGGCCTTCCTCAATTTGACAATAACAGCATTGTTGCTGAACCAAATGCTAGTGAAGAGTGGCAACCTTCTTTTGCTAGCAATACTTCACATTTTAAAAATGTACAGGGGAGCTACACTAGTACTGTTCCTCCCAGTCCATCGTCTGCACTTGCCCCAAAGTCTGATAACTTGCTTGGAGAGGAGAGCAAAAAGGTGGTATTAGACACCGATATGGGATATACTAGTTTGGGACCCCGTTCACAACTTTCTAATAATTCTACAAATATCAGAGAGGACAAGGAGAAAGAACAAGTTGAAAAATCTGAGAGATGGTTTAAAAAGGTTGCTGAGCTGAACGATTTTCCTGATATAACAAGTGCAATTTCTGATGAGGATTTCCCTGAAATAATGCCTATGCGAAAAGGAGAAAATCGATTTGTTGTTAGCAAGAAAAAGGATCGTTCTTTGACAACACCAGCATATAAGAGACAAGCGGCCATGGATCAAGCTAGCAAAACCAACTTTGTCCCCTTTGTTCCCTTCCCCCCGGATTACTTTGCCAAAAAGGACAAGCTGCAAGCAGATGGAACAGATTCAACAGATAGGTCTGATGATGGTAAATCTTCCATATCTAAGGTGGCAGAGAAGGCTGCTGAGATGTCAGATGACCCTAGAACTAAACCAGGACATAGTCCAAAGCCTTCCGAACAGAGCTCAAATTACAATGATGTTGGCTCAATGCATGTGGCAGGAACCAGTGGAAATTCAAGTCAGAGTTCCAATCAAGATCATGTTCCAAATTTGACTGGGAGTTCATCCCCAGGTACAGCATCTGAGAGCCAGAGTGGTAGGGCAGAGTGGACAGGAAAGAGTTTGGAGGGGTCAGCCGTAAAGGAACCAGATCCTTTGGACATGTCAGAGGAGGCAAAGGCAGAGAGGTGGTTCCGGCGAGTCGCACAGATTAAGGATATTTCTGAGCTCAGTCAGATTCCAGATGAAGATTTTCCTTCAATAATGCCTATGCGCAAAGGGGTGAACAGATTTGTTGTAAGCAAGAGGAAAACGCCATTGGAAAGGAGATTGATATCTCAACAGGGCCGAATAAATCTTCCAACTGTGAGCTCAGATCCAAGTAAAAATGAAAATGAAGGTAGCTGA 2451 0.4582 MGGVAPRFLFLLATPLPLLRRHHHHRNLFLLSSHSLRLSSSPSSLSFSSSPLPLKLRASQASSRSSSPWPEWSSFLSHISSAGYLSSLPDDAFATVAGHLSHSFLRDATACLAFARDRPNLLRLLSTRDIATVVEHGSPFLFRDADDSIRKMKSFLSNGDANVLETDRANTVDLMKFLLSYASDPFVPSEGNSLNKRNLIESSVRNLFGELFKLSYSAPPPNSFDSVQSQMSGRFGQTRPPGQKIEMKRGDWICPRCNFMNFARNIKCLECEEARPQRQLAGGEWECPQCDFYNYGRNMNCLRCDCKRPGQISLGAPNTMSNMEYENGNNPNTSDFDARLAANEEKAQRWFSKVSQQDSSADINSVIADEDFPEIMPLRKGVNRFVVSTRKIPLERRLADARFKRNLSNNDIPGIEDFKAGEPIKFHDNLDDMPGHSAGLPQFDNNSIVAEPNASEEWQPSFASNTSHFKNVQGSYTSTVPPSPSSALAPKSDNLLGEESKKVVLDTDMGYTSLGPRSQLSNNSTNIREDKEKEQVEKSERWFKKVAELNDFPDITSAISDEDFPEIMPMRKGENRFVVSKKKDRSLTTPAYKRQAAMDQASKTNFVPFVPFPPDYFAKKDKLQADGTDSTDRSDDGKSSISKVAEKAAEMSDDPRTKPGHSPKPSEQSSNYNDVGSMHVAGTSGNSSQSSNQDHVPNLTGSSSPGTASESQSGRAEWTGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLISQQGRINLPTVSSDPSKNENEGS 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03608 816 PANTHER ZINC FINGER PROTEIN 32 391 - -
Spst1g03608 816 MobiDBLite consensus disorder prediction 620 661 - -
Spst1g03608 816 MobiDBLite consensus disorder prediction 662 719 - -
Spst1g03608 816 MobiDBLite consensus disorder prediction 512 534 - -
Spst1g03608 816 ProSitePatterns Zinc finger RanBP2-type signature. 252 271 IPR001876 -
Spst1g03608 816 ProSiteProfiles Zinc finger RanBP2 type profile. 281 310 IPR001876 -
Spst1g03608 816 MobiDBLite consensus disorder prediction 473 490 - -
Spst1g03608 816 MobiDBLite consensus disorder prediction 796 816 - -
Spst1g03608 816 ProSitePatterns Zinc finger RanBP2-type signature. 285 304 IPR001876 -
Spst1g03608 816 MobiDBLite consensus disorder prediction 581 604 - -
Spst1g03608 816 MobiDBLite consensus disorder prediction 473 494 - -
Spst1g03608 816 MobiDBLite consensus disorder prediction 795 816 - -
Spst1g03608 816 Pfam Zn-finger in Ran binding protein and others 283 309 IPR001876 -
Spst1g03608 816 Pfam Zn-finger in Ran binding protein and others 249 277 IPR001876 -
Spst1g03608 816 Gene3D - 241 278 - -
Spst1g03608 816 Gene3D - 279 311 - -
Spst1g03608 816 SMART zf_4 283 307 IPR001876 -
Spst1g03608 816 SMART zf_4 250 274 IPR001876 -
Spst1g03608 816 MobiDBLite consensus disorder prediction 620 739 - -
Spst1g03608 816 MobiDBLite consensus disorder prediction 223 242 - -
Spst1g03608 816 MobiDBLite consensus disorder prediction 223 237 - -
Spst1g03608 816 ProSiteProfiles Zinc finger RanBP2 type profile. 248 277 IPR001876 -
Spst1g03608 816 SUPERFAMILY Ran binding protein zinc finger-like 243 277 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03608 Spst-Chr1 45491034 45494424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03608 68 314 EF-hand Containing Proteins AT1G55040 34.828 2.57e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03608 - - gmx:100792849 1216.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03608 1 45491034 45494424 Spst1g03608 1 45491034 45494424 ECH