Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03547 GAGGAGTATGTCCTTGATGAAGATGATTATGAGTTGCTGGAGGACAATAATATCAATATTCATCGTCGGAAGGAGAGCAAAAAGTTCAAGCGGCTGAAAAAAGGCCGGAGGGACACTGAGGAGGAGCCCTCTGGGCTTTCTGATGAGGAGGAGTTTGTTGGAAGTGGTAAAGTTGGGCGAACTGCAGAGGAGAAGCTTAAACGCAGCTTATTTGGTGATGATGAAGGAGCTCCACTTGAAGACATTGCTGAAGAGGAGGAACAAGGAGAAGAGGAAGAGGATGCTGACATTGGAGAAGATGATGAAATGGCTGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAATGGAGCTCCCATGAGGCAGAGGAAGCTGAAGAAAAAGAAAACAAGGCAGGCTCCAGGAGTTTCTTCCTCAGCTCTACAAGAAGCTCAAGAATTATTTGGTGATCCAGATGAGTTGATTCTGAATCGTCAGAAAAATCTTGAAATGAGTGAATACAGAGAGACTAGACTTGAAGATGAATTTGAGCCTATTGTTCTTTCTGAGAAATATATGACAGAGCAGGATGACCAAATTAGGGAGCTTGATATTCCTGAGAGAATGCAGATATCAGAGGAGAGTACTGGTGCTCCTCCATTGGATGGCAGTAGTATAGATGAAGAGAGTCAATGGATAGTTAATCAACTTGGCAATGGAGCAGTCCCTTGGATTTACAAGAAGGTCTCAAACTCACAAAACAATGAAAAGGATGACCTACCAATCGACAAGGATGATATTATCAGATTTTTGGAACTGCATCATGTGCAAAAGTTAGATATTCCTTTCATTGCTATGTATCGGAAGGAGGAATGCTTAAGCCTATTAAAAGACCTGGAGCAGCCTGAAGCTAGTGACGAGAATGACAAGACGCCTACTCTGAAATGGCACAAGGTTCTTTGGGCTCTTCAGGACTTGGACAAGAAGTGGTTGCTTCTTCAGAAGCGGAAGAGTGCCCTCCAGTCATACTATAGTAAACGGTTCGAAGAAGAGTCCCGTCGCGTCTATGATGAAACAAGACTAAACTTGAATCGTCAATTGTTTGAATCAGTGATGAGATCGCTGAAAGAAGCAGAGTCTGAAAGGGAGGTTGATGATGTTGATTCCAAGTTCAACTTGCATTTCCCACCAGGTGAAGCTGGTGTTGATGAAGGACAATACAAGAGGCCGAAAAGAAAGTCCATGTATAGCACTTTCAGTAAGGCAGGTCTATGGGAGGTTGCGAGCAGGTTTGGGTGTAGTCCCGAGCAACTTGGATTATGTCTAACTGTAGTTAACCTTCAAGAGTTGGAAGATCCAAAGGAAACACCAGAGGAGATGGCTTCTAACTTCACATGTGCTATGTATGATACTCCTGAAGAAGTACTTAAATGTGCCAGGCACATGGCAGCTGTTGAGATAAGTTGTGAACCTAGCATTAGGAAGCATGTTCGTAGCCACTTTCTTGACCATGCAGTTGTGTCAACTTGTCCTACTGCTGATGGAAATACAACGATAGATTCTTTCCATCAGTTTGCTGGGGTGAAGTGGCTACGGGAGAAGCCTTTGTCTAAGTTTGAAGATATGCAATGGCTCCTTATACGGAAGGCAGAAGAGGAGAAACTCATTCAAGTTACTATTAAGTTGCCCGAGGAGTATCTGAATAAGTTGATAGACCAATTCAATGAGTATTATATTAGTGACAGTGTTAGCAGATCTGCTCAACTGTGGAATGAACAAAGGAAGTTGATACTGCATGATGCTATTTTTCGATTCCTTTTACCATCAATGGAAAAAGAGGCAAGAGGTGTATTGGCAAGTAAAGCAAAAAGTTGGTTACTTATTGAATATGGGAAGGCATTATGGAATAAGGTTTCTGTTGGACCTTATCAACAGAAGGAAAATGATCTTGGCTCAGATGATGAGGCTGCTCCTAGGGTTATGGCATGCTGTTGGGGACCTGGAAAGCCACAGACAACTTTTGTCATGTTAGATTCATCAGGAGAAGTGCTAGATGTGCTTTACACTGGTTCCCTTACTTTTAGGTCACAGAATGTTAATGACCAACAACGGAAGAAGAATGATCAGGAACGAGTGTTGAAGTTTATGACTGATCACCAACCACATGTTGTTGTTTTAGGTGCAGTTAACTTGTCTTGCACCCGTTTGAAAGACGATATATACGAGGTCATTTTTAAGATGGTGGAGGAAAACCCTAGAGATGTTGGGCATGAAATGGATGGGCTCAGCATTGTCTATGGAGATGAATCACTTCCACGTCTTTATGAAAATTCTCGAATTTCCTCAGAACAACTTCCTTCACAGCAAGGTATAGTGAGGCGGGCTGTTGCTCTTGGGCGTTATCTCCAGAACCCATTGGCAATGGTTGCGACATTATGTGGACCTAGAAAGGAAATAATGTCATGGAAACTGAGCCCTTTTGAGAGTTTTCTCAACCAAGATGATAAATTTTCGATGGTTGAGCAGGTTATGGTAGATGTGACCAATCAGGTTGGTTTAGACATTAATTTAGCAATAAGTCATGAGTGGTTATTTGCTCCATTACAATTTATTTCTGGGCTTGGTCCAAGGAAGGCTGCATCCTTACAGAGATCTCTGGTAAGAGCTGGGGCTATTTTTACTCGAAAGGACTTTCTCACAGAACATAAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTCTTGCGTGTCCGGCGTAGTGGGTTGGCTGCTAGCAGCAGTCAATTTATTGATTTGCTGGATGATACAAGAATTCATCCTGAATCTTATATTCTGGCACAAGAGTTGGCAAAAGATGTGTATGAAGAAGATGGCACAGGTGATGCAAATGATGATGATGATGCACTTGAGATGGCCATAGAGCATGTGAGAGACCGGCCTAGTTATTTGAAAAATCTTGATGTTGAGGAATATGCTTCTGGGAAAAAACGTCAGAACAAAATACAAACTTTCTATGACATAAAAAGAGAATTAATTCAAGGTTTTCAGGATTGGCGCAATCAATATGAAGAACCAAGTCAGGATGAGGAATTCTATATGATTTCCGGTGAGACTGAAGAGACCCTTGCTGAAGGCAAAATCGTTCAAGTCACAGTTCGCAGGGTGCAGGCTCAGAAAGCAATATGTGGGCTTGAATCTGGAATGACAGGAATCCTCTTGAAAGAAGACTACACGGATGACTGGAGAGATGTAATTGAATTATCTGATAGGCTACATGAAGGTGACATGCTTACTTGTAAAATCAAGTCAATCCAAAAGAATAGGTATCAAGTCTTCCTTGTTTGTAAGGACAGTGAAATGAGAAGTAATAGGTTACAGAATAACCGTGATATTGACCCCTATTACCATGAAGATCGGAGCTGCTTTCAGAGTGATCAAGACAAAGCTAGGAAAGAAAAGGAACTTGCAAAGAAGCATTTCAAGCCAAGGATGATTGTTCATCCACGCTTTCAGAACATAACTGCAGATGAAGCAATGGAGTTCTTGTCGGATAAAGATCCTGGAGAAAGTATTATCCGTCCTAGTTCACGAGGACCTTCATATCTTACTTTAACTCTTAAAATTAATGACGGAGTATATGCCCACAAGGATATAGTTGAAGGTGGGAAGGAACACAAGGACATTACAAGCTTGCTCCGAATTGGGAAGACACTAAAAATTGGAGATGACACTTTTGAGGACTTGGATGAGGTTATGGACCGTTATGTTGATCCATTGGTGGCTCACTTAAAGGCAATGTTAAACTATCGCAAATTTCGAAAGGGTACAAAAGCAGAAGTTGATGAACTTTTGAGGATGGAGAAAGCCGAGTATCCTATGCGCATTGTCTATAGTTTTGGCATCTCCCACGAACATCCTGGCACATTTATATTAACTTATATAAGAAGTACAAATCCTCACCACGAGTACATTGGGCTTTACCCAAAAGGATTCAGGTTCAGGAAAAAGATGTTTGAGGACATTGATCGGCTTGTGGCATATTTTCAAAGGCATATTGATGATCCGCAGCATGACTCGGCCCCTTCCATTAGATCTGTTGCTGCTATGGTACCGATGCGAAGCCCTGCAGCTGGTGGCTCGTCAGGTGCATCTGTGGGTAGTGGCTGGGGTGGTGGTTCAAACAGTGAGGGAGGTAGGAGAAGTCACTCTTATGATAGGGATCGATCGTCTACTCCTGGTTCCAGGACAGGACGGGGTGAGTATAGAAGCAACGGGAATCAGGACGAACATCCTAGTGGGGTGCCTCGTCCATATGGACGAGGACGCGGTCGTGGTCGAGGTTCTTATAACAACAGAGGACACAACTCCAACAATGAAAGACAAGACTCTGGTTATGGGGGCAGCAGGTGGGGTTCTAATAATACAAAGGATTCAGATGATGGTTTAAGTAGTTTTCCAGGGGCCAAGGTTCAAAACTCTCCTGGAAGGGAAGCTTTTCCTGGTGGTTGGGGTGGTGGAAGTGGTGGTTGGGGGGGTGGAAGTGGTGGAGCTAATAACAATGACGGTGGTGGCTGGGGACAGGAGATTGGTGGTACTGGTCCAAGTGATGGTGATCAAGGAAGCTCTGGCTGGGGAACTGCCCCCAAAAAAGCAGCAGCCGGGAACGGATGGGGGTCTGGAAATTCTGGTGGTTGGTGA 4680 0.4325 EEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGRRDTEEEPSGLSDEEEFVGSGKVGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEDDEMADFIVDEEEVDENGAPMRQRKLKKKKTRQAPGVSSSALQEAQELFGDPDELILNRQKNLEMSEYRETRLEDEFEPIVLSEKYMTEQDDQIRELDIPERMQISEESTGAPPLDGSSIDEESQWIVNQLGNGAVPWIYKKVSNSQNNEKDDLPIDKDDIIRFLELHHVQKLDIPFIAMYRKEECLSLLKDLEQPEASDENDKTPTLKWHKVLWALQDLDKKWLLLQKRKSALQSYYSKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSPEQLGLCLTVVNLQELEDPKETPEEMASNFTCAMYDTPEEVLKCARHMAAVEISCEPSIRKHVRSHFLDHAVVSTCPTADGNTTIDSFHQFAGVKWLREKPLSKFEDMQWLLIRKAEEEKLIQVTIKLPEEYLNKLIDQFNEYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARGVLASKAKSWLLIEYGKALWNKVSVGPYQQKENDLGSDDEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTFRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEIMSWKLSPFESFLNQDDKFSMVEQVMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYASGKKRQNKIQTFYDIKRELIQGFQDWRNQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILLKEDYTDDWRDVIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLQNNRDIDPYYHEDRSCFQSDQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKINDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGDDTFEDLDEVMDRYVDPLVAHLKAMLNYRKFRKGTKAEVDELLRMEKAEYPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPAAGGSSGASVGSGWGGGSNSEGGRRSHSYDRDRSSTPGSRTGRGEYRSNGNQDEHPSGVPRPYGRGRGRGRGSYNNRGHNSNNERQDSGYGGSRWGSNNTKDSDDGLSSFPGAKVQNSPGREAFPGGWGGGSGGWGGGSGGANNNDGGGWGQEIGGTGPSDGDQGSSGWGTAPKKAAAGNGWGSGNSGGW 1559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03547 1559 Pfam Acidic N-terminal SPT6 2 38 IPR028083 -
Spst1g03547 1559 SUPERFAMILY Ribonuclease H-like 651 806 IPR012337 -
Spst1g03547 1559 MobiDBLite consensus disorder prediction 77 113 - -
Spst1g03547 1559 ProSiteProfiles S1 domain profile. 1039 1110 IPR003029 GO:0003676
Spst1g03547 1559 FunFam Transcription elongation factor spt6 1259 1352 - -
Spst1g03547 1559 FunFam Transcription elongation factor spt6 819 914 - -
Spst1g03547 1559 FunFam Transcription elongation factor spt6 1147 1258 - -
Spst1g03547 1559 SUPERFAMILY RuvA domain 2-like 821 912 IPR010994 -
Spst1g03547 1559 CDD SH2_Cterm_SPT6_like 1260 1346 IPR035018 -
Spst1g03547 1559 Gene3D SH2 domain 1259 1355 IPR036860 -
Spst1g03547 1559 SUPERFAMILY Tex N-terminal region-like 250 630 - -
Spst1g03547 1559 PIRSF Spt6 1 1417 IPR017072 GO:0032968
Spst1g03547 1559 SMART S1_6 1037 1110 IPR022967 -
Spst1g03547 1559 Pfam Helix-hairpin-helix motif 810 911 IPR032706 -
Spst1g03547 1559 Gene3D SH2 domain 1147 1258 IPR036860 -
Spst1g03547 1559 FunFam Transcription elongation factor spt6 641 813 - -
Spst1g03547 1559 SUPERFAMILY RuvA domain 2-like 925 1014 IPR010994 -
Spst1g03547 1559 FunFam Transcription elongation factor spt6 1032 1120 - -
Spst1g03547 1559 Gene3D - 209 407 IPR023319 -
Spst1g03547 1559 Gene3D - 1032 1120 IPR012340 -
Spst1g03547 1559 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 2 1465 IPR017072 GO:0032968
Spst1g03547 1559 CDD SH2_Nterm_SPT6_like 1161 1249 IPR035019 -
Spst1g03547 1559 MobiDBLite consensus disorder prediction 1368 1559 - -
Spst1g03547 1559 Gene3D - 920 1012 IPR042066 -
Spst1g03547 1559 Pfam HHH domain 926 1013 IPR041692 -
Spst1g03547 1559 Gene3D - 408 844 IPR023323 -
Spst1g03547 1559 Gene3D - 641 1031 IPR037027 GO:0006139
Spst1g03547 1559 FunFam Transcription elongation factor Spt6 918 1012 - -
Spst1g03547 1559 Pfam SH2 domain 1128 1345 IPR035420 -
Spst1g03547 1559 FunFam Transcription elongation factor spt6 399 657 - -
Spst1g03547 1559 SMART rnase_8s 651 769 IPR006641 GO:0006139
Spst1g03547 1559 MobiDBLite consensus disorder prediction 29 140 - -
Spst1g03547 1559 MobiDBLite consensus disorder prediction 1443 1484 - -
Spst1g03547 1559 FunFam Transcription elongation factor spt6 209 396 - -
Spst1g03547 1559 SUPERFAMILY SH2 domain 1164 1250 IPR036860 -
Spst1g03547 1559 Pfam Holliday-junction resolvase-like of SPT6 650 806 IPR028231 -
Spst1g03547 1559 Gene3D - 176 914 - -
Spst1g03547 1559 MobiDBLite consensus disorder prediction 53 75 - -
Spst1g03547 1559 MobiDBLite consensus disorder prediction 1393 1407 - -
Spst1g03547 1559 MobiDBLite consensus disorder prediction 1408 1424 - -
Spst1g03547 1559 SUPERFAMILY Nucleic acid-binding proteins 1034 1114 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03547 Spst-Chr1 44673577 44680892 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03547 K11292 - gmx:100809136 2765.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03547 1 44673577 44680892 Spst1g03547 1 44673577 44680892 ECH