Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03533 ATGTGGTTGACTTGGCTACGAACCATGGGGTTGGGGTCCCCTCCTTGCCCACAATCGGCCTTGAGGTTCGGTATTGCCAACTTGACATTGTTTTTTTCAAATGATGTCTATAAGGGTGAGCTAGCCCTAGCATTTGGTGATTTGCTTCGAAAGCTATGGGCACCTGGGCGAACACCAATTGCTCCTCGGCCCTTTAAAACAAAGCTTGTTCGCTTTGCACCTCAGTTCAGTGGGCACAATCAACATGATTCTCAGGAGCTCTTAGCATTTCTTCTGGATGGTCTTCATGAAGATTTGAATCGAGTAAAGCACAAACCATATATAAAGTCGCGAGATGCTGATGGCAGACCTGATGAAGAAGTGGCTGATGAATATTGGGCAAATCATATTTCACGTAATGATTCAATAATTGTTGATGTATGCCAGGGACAATACAAGTCAACTTTGGTTTGTCCAGTTTGCAATAAAGTCTCTGTCACATTTGATCCATTTATGTACCTTTCCCTGCCACTCCAGTCCTCTACCACCAGTAGGACCATGACAGTGACAGTTTTTGCTTGTGATGGGGCTACCCTCCCATATTCTTGTACAGTAACTGTCCCTAAGCAGGGACGAGTCAAAGATCTCATCCAGGCACTTAGCAATGCTTGCACATTGAAGCACAATGAGAGGCTATTGCTTGTGGAGATACGGAATCATTTAATCCATAGATATTTGGAAGATCCTCTTCATTTGTTGTCTACTATCAAAGATGATGAGCGGCTAGCTGCTTACAAGATTCCAAAGATAGACAAGAACACGAAGTATCTCCAGTTGATACATCGCCGACGAGAGCAGAGCAGTGACTCACACGTCATATCAGGATGGAAACCGTATGGAACACCTATTGTTTCATTGATTTCATGTGATGATACAGTGACAAGAGGTGATATACAAGTAATAGTTAATCGTATTCTCTCCCCTCTGCAAAGGAGAGGTGGCAATGTAGAACAAGCTACTACTTCTGAAGCAAGCATCCCAAAAGCAGCATCTGATGAATGCAGTCTTACTTGTGATGATGCATGTGCTGGCAACATGGTGTCAAATTCATTAAATAAGGATTTTACCAATTCAAAGGCACCATCAATGCCAACGTTACCTCTTCTCTTGGTGGATGATAACAATGCTTGCATTGATCTTTCAATGGGAGAGGAGAAAGTGGTTAAACTGTCACCATCATCCCCAAAAGTTTTAGTGTATATTGATTGGTCTCAGAAGCTTCTGGAGAAGTATGATACACATCCAATTGAGACTTTGCCTGAAGTTTTAAAATATGGGCCTGTAACCAAGAAAGCTCGTACTGAACCTCTCTCCTTGTACACCTGCTTGGAAGCTTTTCTGCGTGAGGAACCTCTGGTGCCTGAAGATATGTGGTACTGCCCTAAATGCAAAGAGAGACGACAAGCAAGCAAGAAGCTTGATTTGTGGAGGCTCCCAGAGGTTTTGGTCATTCATTTGAAGAGGTTTTCATACAGCAGGTCAATGAAGCATAAACTGGAGACTTTTGTTAACTTTCCCATTCATGATTTTGATTTAACTAATTACATAGCCAACAAAAACAACTCTCGCCGCCAACTGTACGAACTATATGCCCTTACAAATCATTATGGTAGTATGGGTAGCGGGCATTACACTGCACATATTAAGCTTTTAGATGAGAACAGGTGGTACAATTTTGATGACAGCCACATATCACTGATAAGTGAGGATGATGTTAACACTGCTGCTGCCTATGTTCTCTTTTACCGGAGGGTGAAGACCGACGAGGCAGCCATTAGCAATGGAGCTTAG 1830 0.4273 MWLTWLRTMGLGSPPCPQSALRFGIANLTLFFSNDVYKGELALAFGDLLRKLWAPGRTPIAPRPFKTKLVRFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHISRNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSSTTSRTMTVTVFACDGATLPYSCTVTVPKQGRVKDLIQALSNACTLKHNERLLLVEIRNHLIHRYLEDPLHLLSTIKDDERLAAYKIPKIDKNTKYLQLIHRRREQSSDSHVISGWKPYGTPIVSLISCDDTVTRGDIQVIVNRILSPLQRRGGNVEQATTSEASIPKAASDECSLTCDDACAGNMVSNSLNKDFTNSKAPSMPTLPLLLVDDNNACIDLSMGEEKVVKLSPSSPKVLVYIDWSQKLLEKYDTHPIETLPEVLKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQLYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHISLISEDDVNTAAAYVLFYRRVKTDEAAISNGA 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03533 609 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 4 598 IPR028889 -
Spst1g03533 609 SUPERFAMILY Cysteine proteinases 33 598 IPR038765 -
Spst1g03533 609 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 31 597 - -
Spst1g03533 609 Pfam Ubiquitin-specific protease C-terminal 165 301 IPR029346 -
Spst1g03533 609 CDD Peptidase_C19R 443 596 - -
Spst1g03533 609 Gene3D Cysteine proteinases 21 225 - -
Spst1g03533 609 Pfam Ubiquitin carboxyl-terminal hydrolase 37 595 IPR001394 GO:0004843|GO:0016579
Spst1g03533 609 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 540 557 IPR018200 GO:0004843|GO:0006511
Spst1g03533 609 Gene3D Cysteine proteinases 412 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03533 Spst-Chr1 44476643 44490125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03533 451 600 Miscellaneous Gene Families AT4G31670 34.641 8.04e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03533 - - gmx:100794067 1080.86