Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03532 ATGACGGAGGTGTCGATGTGTGGCAGCAGCGTCTCTGAGCTGAGTCCGGATGAGGAGAGAATCATGATCAAAGACATTGCTCTCGCAGCCCAAGCTAACAGCAAAGAAGGAGACACCTTCTTCTTAATCACTCAGAGATGGTGGCAATATTGGATTGAATATGTGAACCAAGACCAGTCAAACACTTCATATGATGGATCTTCCTTATCAGAACATTGTGATTTGGCCAATTCAACTGCTTTAAAGAGGCCAGCCGGTATTGATAATTCTGATTTGATAGATGATGCTGTATCCGAGGACTCTGGTATGGGTATTGAGATTCATGATACTCTTCTGGAAGGACGTGACTATGTATTACTTCCCCAAGAAGTCTGGGATCAATTATTTAGATGGTATGGTGGTGGCCCTACATTGGCAAGGAAAGTTATTAGTTCAGGTCTTTCCCAGACTGAATTGGCTGTAGAGGTGTATCCTCTGCGTCTTCAATTACTAATGTTGCCAAAAAATGACCGTTTTGCTATAAGAATAAGCAAGAAGGAAACCATCGGACAGCTTCACAGAAAAGCTTGTGAAATATTTGATCTTCAACCAGACCAAGTGTGTATTTGGGATTACTATTCTCGTCGGAAGCATGCTTTGATGAATGACATGGACAAAACTCTTGATGATGCTAATTTACAAATGGACCAAGACATTCTTGTTGAGGTAATCAATAATTCAAACAACACAAGTTTTGCTCAAGAAAATGGTTCTGCACTGAGGGAAGCGAATTTAGCTCTTGTGGAGCCTCCAAAGTCAAGCTTATCAATTGCTGGTGGCTTATCTGCTAGCAAAGGTGCATCTAGAGGCTACAACACAGACCTTTCGTCATCCATGAACATAAATTCTCCGGTTAGAGATGTGGAAAACCCTTATGGAACCAGTGGTGTCACCACAAGAGGTTCATTTGGTGGTCTGACTGGGTTGCTGAATCTTGGCAATACCTGTTACATGAATAGTGCAATACAATGCCTTGTTCATACACCAGAATTCACTAGGTACTTCAGGGAAGACTATCATCGAGAGATAAATTGGCAAAATCCATTGGGCATGGTTGTAAGTATCATCTAA 1110 0.4171 MTEVSMCGSSVSELSPDEERIMIKDIALAAQANSKEGDTFFLITQRWWQYWIEYVNQDQSNTSYDGSSLSEHCDLANSTALKRPAGIDNSDLIDDAVSEDSGMGIEIHDTLLEGRDYVLLPQEVWDQLFRWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLMLPKNDRFAIRISKKETIGQLHRKACEIFDLQPDQVCIWDYYSRRKHALMNDMDKTLDDANLQMDQDILVEVINNSNNTSFAQENGSALREANLALVEPPKSSLSIAGGLSASKGASRGYNTDLSSSMNINSPVRDVENPYGTSGVTTRGSFGGLTGLLNLGNTCYMNSAIQCLVHTPEFTRYFREDYHREINWQNPLGMVVSII 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03532 369 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 320 369 IPR028889 -
Spst1g03532 369 SUPERFAMILY DUSP-like 15 143 IPR035927 -
Spst1g03532 369 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 246 359 - -
Spst1g03532 369 SMART dusp 33 146 IPR006615 GO:0004843
Spst1g03532 369 Gene3D - 6 156 IPR035927 -
Spst1g03532 369 SUPERFAMILY Ubiquitin-like 168 239 IPR029071 -
Spst1g03532 369 Pfam Ubiquitin carboxyl-terminal hydrolase 320 364 IPR001394 GO:0004843|GO:0016579
Spst1g03532 369 Gene3D - 157 244 - -
Spst1g03532 369 SUPERFAMILY Cysteine proteinases 316 361 IPR038765 -
Spst1g03532 369 Gene3D Cysteine proteinases 310 369 - -
Spst1g03532 369 Pfam DUSP domain 37 143 IPR006615 GO:0004843
Spst1g03532 369 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 321 336 IPR018200 GO:0004843|GO:0006511
Spst1g03532 369 ProSiteProfiles DUSP domain profile. 14 143 IPR006615 GO:0004843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03532 Spst-Chr1 44472141 44475052 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03532 - - pvu:PHAVU_001G118800g 689.108