Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03506 ATGGCTATGCACAAGATTCTGCAAAGGGGTCGTCCATTCTTTAATCCTCCTCAGCAACTATTTACTGCTTTCTCACCTTCTCACACATTTCGCTCTTGTGGAGATGAATCCCTTCATGTTTGGGAAATCACAGACACAAGAGAAGTTAGGAATGAATTTGACAAGGCCAACATAAAAGGTTCATCTCAATGTCTCAACTGGACTTCAAGGCCAAATTACTGTAGTCATGCTTCTTGCTACGTGGTAAATCGTCATTTTGCATCTGATCGCAATGATATATGCACAAAGGAGTTCTCAAGTAAGCTTCTTAAAACTATTCCAGACTATGTAAAGATAGTGGAGGTTGGTGCAAGGGATGGATTGCAAAATGAGAAGGCTATTATTCCTACTAATGTAAAAGTTGAGCTAATACAACTACTGGTTTCTTCCGGATTGTCTGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAGTTGGCAGATGCAAAGGATGTGTTGGCAGCAATTCAAAATGTTGTAGGTGCTAGGTTTCCTGTCTTGACTCCAAACATTAAAGGTTTTGAGGCAGCTGTTGCTGCTGGCGCTAAAGAAGTGGCTGTTTTTCCTGCAGCTTCTGAATCATTCTCAAAAGCAAATTTAAATTGTGGCATTGAGGATAATCTTGCTCGCTGCCGCGATATTGCTTCCGCTGCTGGAAGCCTCTCGATCCCAGTTCGTGGATATATATCATGTGTTGTGGGATGTCCTCTGGAAGGAAATATTGCTCCAGCAAAAGTAGCATATGTGGCAAAATCACTGTATGAGATGGGTTGCGCAGAGATTTCACTGGGTGATACAATTGGTGTTGGCACTCCTGGTAATGTTTCTCTCGTTGCTGTCTCTTATGTTGTGCAAGCAAGTTTAGCTTTGGTTGCGATGCTGGCTGGTACTGTCATTCCGATGCTTGAAGCTGTTCTTGATGTTGCTCCAACTGACATGCTTGCTGTCCATTTTCACGATACTTATGGTCAGGCGCTTTCAAATATTTTAATTTCACTTCAGATGGGGATCAGCACAGTGGATTCATCTGTTTCTGGTCTTGGAGGTTGTCCATATGCCAAGGGTGCAACTGGGAATGTAGCCACTGAGGATGTCATTTACATGCTGAATGGACTTGGAGTGAAAACAAATGTGGACCTTGAAAAGCTTATGCTGGCTGGGAATTTCATCTGCAAGCATTTAGGACGTGCATCTGGTTCCAAAGCAGCTACTGCTTTGTGTAAAGTTACTAGTCATGCCTCCAAACTATGA 1299 0.4296 MAMHKILQRGRPFFNPPQQLFTAFSPSHTFRSCGDESLHVWEITDTREVRNEFDKANIKGSSQCLNWTSRPNYCSHASCYVVNRHFASDRNDICTKEFSSKLLKTIPDYVKIVEVGARDGLQNEKAIIPTNVKVELIQLLVSSGLSVVEATSFVSPKWVPQLADAKDVLAAIQNVVGARFPVLTPNIKGFEAAVAAGAKEVAVFPAASESFSKANLNCGIEDNLARCRDIASAAGSLSIPVRGYISCVVGCPLEGNIAPAKVAYVAKSLYEMGCAEISLGDTIGVGTPGNVSLVAVSYVVQASLALVAMLAGTVIPMLEAVLDVAPTDMLAVHFHDTYGQALSNILISLQMGISTVDSSVSGLGGCPYAKGATGNVATEDVIYMLNGLGVKTNVDLEKLMLAGNFICKHLGRASGSKAATALCKVTSHASKL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03506 432 Gene3D Aldolase class I 103 425 IPR013785 -
Spst1g03506 432 Pfam HMGL-like 110 291 IPR000891 GO:0003824
Spst1g03506 432 Pfam HMGL-like 317 406 IPR000891 GO:0003824
Spst1g03506 432 FunFam Hydroxymethylglutaryl-CoA lyase, mitochondrial 104 425 - -
Spst1g03506 432 CDD DRE_TIM_HMGL 112 408 - -
Spst1g03506 432 ProSiteProfiles Pyruvate carboxyltransferase domain. 110 400 IPR000891 GO:0003824
Spst1g03506 432 SUPERFAMILY Aldolase 105 424 - -
Spst1g03506 432 PANTHER HYDROXYMETHYLGLUTARYL-COA LYASE 90 426 IPR043594 GO:0016833
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03506 Spst-Chr1 44145275 44152187 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03506 K01640 - gmx:100801507 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03506 1 44145275 44152187 Spst1g03506 1 44145275 44152187 ECH