Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03503 ATGTGTAATAAAAAGCCCAAAAAGGCCCAATCTTTGGGTTTGGGAACTGAAAAGTTAACTGTTGCATATTTTGGTTTAGAAATTATGAATAATGTTGCTGAAAGGCCACTTAATGGAGACGTAGAGGATGATGATGAGGATGATGGTGCAGACCTTGAAGCCTGGGAGAGAACTTACGCGGAGGATAGATCATGGGAGGCTTTGCAGGAGGATGAGTCTGGACTTCTTCGCCCCATTGATACTACAGCTATATACCATGCTCAATATCGCAGGCGCCTTCGTACCCTTGCTGCCACAGCGGCTACTGCACGGATTCAGAAGGGGCTTATACGATACCTGTACATTGTTGTGGACCTGTCTAAGGCAGCTTCAGAGAGAGACTTCCGACCAAGTAGGATGGCCGTGATTGCAAAACAGGTTGAGGTATTTATCAGGGAATTCTTTGATCAGAATCCACTTAGTCATGTTGGTCTGGTTACTATAAAAGATGGTGTTGCTCATTGCATAACAGAACTTGGTGGCAGTCCTGAGTCTCACATTAATGCTTTGATGGGTAAACTGGAATGCTCAGGTGATGCCTCCTTACAAAATGCACTAGAGCTTGTTCTTGGATATCTAAATCAAATCCCATCATATGGTCATCGAGAAGCTCTGATCTTATATTCGGCTCTCAGCACTTGTGATCCTGGTGATCTCATGGAAACCATTCAAAAATGCAAAAAGAGTAAAATAAGGTGCTCAGTCATTGGTCTTGCGGCCGAAATGTTTGTATGTAAACATCTCTGCCAGGAAACTGGAGGGACTTATTCTGTTGCACTAGATGAGTCCCACTTTAAAGAGTTGATCCTGGAGTATGCACCACCACCTCCAGCAATAGCAGAGTATGCTACTGCTAATTTAATTAAGATGGGCTTCCCACAACGATCAGCTGAGGGTTCTGTTGCAATATGCACATGCCATGAAGAGGCTAAGGCCGGAGGGGGATACACTTGCCCAAGGTGCAAAGTTCGTGTCTGTGAGCTTCCCACTGAATGTCGAGTCTGTGGATTGACCCTTATTTCTTCACCTCATTTGGCAAGGTCATATCATCATCTATTTCCTGTTGTGATGTTTGATGAGGTCTCTCCGTCTCAAAATGACTCTAGCCGCAGTTTTCCTAATATTTGTTTTGGTTGTCAACAAAGTCTTCTTACTCAGGGTAAGATTCTTTGTACATTTCCAATTCTGGTGTTGAACAAATTTATAATGACGGTCAACGTATTATGTCAAATTTATACTCATAGATCTGCTTTAAAGGTGAAACAATGCTAA 1311 0.4294 MCNKKPKKAQSLGLGTEKLTVAYFGLEIMNNVAERPLNGDVEDDDEDDGADLEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVEVFIREFFDQNPLSHVGLVTIKDGVAHCITELGGSPESHINALMGKLECSGDASLQNALELVLGYLNQIPSYGHREALILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGTYSVALDESHFKELILEYAPPPPAIAEYATANLIKMGFPQRSAEGSVAICTCHEEAKAGGGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPVVMFDEVSPSQNDSSRSFPNICFGCQQSLLTQGKILCTFPILVLNKFIMTVNVLCQIYTHRSALKVKQC 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03503 436 CDD vWA_transcription_factor_IIH_type 108 290 IPR007198 -
Spst1g03503 436 PIRSF TFIIH_SSL1 28 431 IPR012170 GO:0000439|GO:0006289|GO:0006351
Spst1g03503 436 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 45 400 - -
Spst1g03503 436 FunFam General transcription factor IIH subunit 2 106 291 - -
Spst1g03503 436 ProSiteProfiles VWFA domain profile. 112 251 IPR002035 -
Spst1g03503 436 SMART VWA_4 110 286 IPR002035 -
Spst1g03503 436 NCBIfam transcription factor ssl1 328 396 IPR012170 GO:0000439|GO:0006289|GO:0006351
Spst1g03503 436 SUPERFAMILY vWA-like 107 274 IPR036465 -
Spst1g03503 436 Gene3D von Willebrand factor, type A domain 106 291 IPR036465 -
Spst1g03503 436 Pfam Ssl1-like 116 306 IPR007198 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03503 K03142 - gmx:100803090 683.33