Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03496 ATGATTGTTTTTGAGTTCTATGTGGAAAGTGCTTTAACTAACCCAGCTGTGAAGCCTTGTCGGTTGTGTAGTTTACACAAGTTCCTCAAGGAAAGCAAGTTGTGTGTGTCTATTAAGGCGCTGAGCTGGGCAAAACCGTTCATTTGGCCAAGTCACCTCACCACTCCTCTTCCATTGCCTTGGACCCTTTTGATATATAAACCTTCAACTACAATGCTTTACTTCATTATATCTTTTGTTTCCTTTCTCATCCTTTCCAAGTCCTTTACCAGTAAGCCTCTCTCATCATGGGAGCGTGGGCACAAACTAGGATCAATTGGGTTTTGGGGGAGCCTTTCAAGTTGGCTAGTTTCTGGGCTCAGAAAAGGAAGCACAAGCAGCCCTTGTAGCTTTTTTCAGTTTTCTCTTGTCATGTCATTGAAAAAGAACAGTTTAGAGTCTAAGGTGGAGAATGAGGAAGAGGAGGGAAAGGTTTCTCTCTTGGATTTGCCTGATTTACCATTGGACTGTATCCTTGAGCACCTTTCACCTGCTGAATTATGTAGGGTTGCAACAGCCTGCACATCTCTTAGGGATACAAGTAGAAGTGATCATTTATGGATGAAACACATGGAGAGGAAATGGGGTAAGGTGTTTGGTGATGCTGCTTACAGACAATGGAAATGGCATGTAGCTTCCAAGACCAGAGAGAAGATTTCCAACCTGCAAAATCAGAAAGGAATATTTGCTTTCCTTCATGGTGGTTTTCACCCCTTGGTATGGATTAAAGCAAAATCAGAAAAGGGAACACAATCAAGTAGGTCATTACCAGAAGATTCAATCATGGCTCTATATCTTTCTCTTGAGAGTGGCAAATTTTGGTTCCCAGCGCAAGTCTATAATCGAGAGAACGGTCATGCTGGGTTCATGCTCTCATGTTATGATGCCCAACTTTGCTATGACTCTCGATCTGACACTTTTCTGGCAAGGTACTCACCTCATGGGAGATGGACAACTGAGGAAAACATACAATGGGACCGACTCAGAGTGCCACCAATTGCCTCTCCTCCACATGCTCTTCACATCTCTGACTGTTTGGATGACTTGAAACCTGGAGATCACATTGAGATCCAGTGGAGAAGAAACAAAGAGTTCCCTTATGGTTGGTGGTATGGTGTCATTGGTCATTTGGAAGAGTGTCAAGGGCATGGGAACCATTGTCATTGTCACAATAATGATATGGTGATTTTGGAGTTCACACAGTACACTGCTGAATCCAGATGGAGACAAGCCGTGATAGACAGGAAGCATCATATAGAAAAAGGCAATGAAATAGATGGTTTCTATGGAGGAATCAGGAAGCTGCATAGCAGCGAAGAAATTTCAAGGTGGAAGAAACTCTGGCCAACCAAAATTGTGGTACATGATTGA 1410 0.4298 MIVFEFYVESALTNPAVKPCRLCSLHKFLKESKLCVSIKALSWAKPFIWPSHLTTPLPLPWTLLIYKPSTTMLYFIISFVSFLILSKSFTSKPLSSWERGHKLGSIGFWGSLSSWLVSGLRKGSTSSPCSFFQFSLVMSLKKNSLESKVENEEEEGKVSLLDLPDLPLDCILEHLSPAELCRVATACTSLRDTSRSDHLWMKHMERKWGKVFGDAAYRQWKWHVASKTREKISNLQNQKGIFAFLHGGFHPLVWIKAKSEKGTQSSRSLPEDSIMALYLSLESGKFWFPAQVYNRENGHAGFMLSCYDAQLCYDSRSDTFLARYSPHGRWTTEENIQWDRLRVPPIASPPHALHISDCLDDLKPGDHIEIQWRRNKEFPYGWWYGVIGHLEECQGHGNHCHCHNNDMVILEFTQYTAESRWRQAVIDRKHHIEKGNEIDGFYGGIRKLHSSEEISRWKKLWPTKIVVHD 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03496 469 SUPERFAMILY F-box domain 159 229 IPR036047 GO:0005515
Spst1g03496 469 ProSiteProfiles F-box domain profile. 157 203 IPR001810 GO:0005515
Spst1g03496 469 Gene3D - 143 234 - -
Spst1g03496 469 PANTHER ESTS AU081301(E20138) 72 465 - -
Spst1g03496 469 Pfam F-box domain 160 201 IPR001810 GO:0005515
Spst1g03496 469 SMART fbox_2 163 203 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03496 Spst-Chr1 43974266 43976683 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03496 - - gmx:100778469 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03496 1 43974266 43976683 Spst1g03496 1 43974266 43976683 ECH