Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03492 ATGGACAACATTTCTAGTGACCCTTTTGATGATACCACGGACTACATTTCTAACAACCCTTTTGATCGTACCACAGACGACATTGAATCGCGAAGCGTTCTCTTGACTTTGCCAGAAGCCATTTGGCAAAGCATTCTAGAGCGCCTTTCGCCAAAGGAACTGGCTGGACTGTGTAAAGTGTGTACTTTTTTAAGGGATATATGTCGAAGTGATCGTTTGTGGGAAATCCACGTAGAGAAGAAATGGGGTGGAGTCATTGGTGATGTTGTTTACAAGGAGTGGAAACTGCATATCACAACAGCTAAGGAGAAAAGAAACGGCCCCTTGTATCAACAGAACAGTGAGAATGGGTCATTGGGATCTTTCAGTGGTACTTGGCCTACGTTATACCTCAGATCATATCTAGATGATTGTAGCCATCTTAATAGCTCATTGTCAAATAGCTTTATGATGGCCTTGTATGTCTCTCTAGAAACTGGCAAGTTCTGGTTTCCGGTTCAAATCTACAGGGGATTATTTGTTCGTGAGGCCTTAGTTAGATATGATTCCAAATCTGATACCTTTCGAGCAAGACGTCAAAGTGGGGGTTGGCACAAAGTGGGGAGCAACATCCAATGGGATAAACTGAGGGCTCCTCCGATTGATATGCCTCCATGTGATGAATACGTCTCTGATTGTTTGCAAGACCTGAAACCAGGGGATCATGTTGAGATCCAACGGAGATCTAGAAATGGAATTCCTTATGGTAGGTTTCTTGTCATTTTGCTTTCTCAGCTCTCAGATACGTTAGCAACAGCTGGTGCAATTGGAAGCTCACAGTTGCTGATGCTGAGTGGGATTGGTCCTGCTAAGCATATGAAGGCTCATGGAATCAACGTGGTTTTGGATCAGCCACAGGTAGGTCAAGGGATGACAGATAATCCAATGAACCTTCTAGTGGTGCCTTCCCTTTTGCCTGTTGAAGTCACTCTGGTCCAAACAGTGGGCATCACAAAAGCTTCATTGAATCAGGTAGTGGATTAA 1023 0.4399 MDNISSDPFDDTTDYISNNPFDRTTDDIESRSVLLTLPEAIWQSILERLSPKELAGLCKVCTFLRDICRSDRLWEIHVEKKWGGVIGDVVYKEWKLHITTAKEKRNGPLYQQNSENGSLGSFSGTWPTLYLRSYLDDCSHLNSSLSNSFMMALYVSLETGKFWFPVQIYRGLFVREALVRYDSKSDTFRARRQSGGWHKVGSNIQWDKLRAPPIDMPPCDEYVSDCLQDLKPGDHVEIQRRSRNGIPYGRFLVILLSQLSDTLATAGAIGSSQLLMLSGIGPAKHMKAHGINVVLDQPQVGQGMTDNPMNLLVVPSLLPVEVTLVQTVGITKASLNQVVD 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03492 340 MobiDBLite consensus disorder prediction 1 21 - -
Spst1g03492 340 PANTHER ESTS AU081301(E20138) 29 251 - -
Spst1g03492 340 SUPERFAMILY F-box domain 22 88 IPR036047 GO:0005515
Spst1g03492 340 Pfam F-box domain 35 74 IPR001810 GO:0005515
Spst1g03492 340 ProSitePatterns GMC oxidoreductases signature 2. 267 281 IPR000172 GO:0016614|GO:0050660
Spst1g03492 340 Gene3D - 307 335 - -
Spst1g03492 340 SUPERFAMILY FAD/NAD(P)-binding domain 264 313 IPR036188 -
Spst1g03492 340 Gene3D - 21 115 - -
Spst1g03492 340 Pfam GMC oxidoreductase 262 308 IPR000172 GO:0016614|GO:0050660
Spst1g03492 340 Gene3D - 265 306 IPR036188 -
Spst1g03492 340 SMART fbox_2 37 77 IPR001810 GO:0005515
Spst1g03492 340 ProSiteProfiles F-box domain profile. 31 77 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03492 Spst-Chr1 43957525 43959334 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03492 260 332 Miscellaneous Gene Families AT5G51930 63.514 6.84e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03492 - - gmx:100797585 318.931