Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03490 ATGTTTCCTGCTGAACAAGAACATGCCTTGCCGGCTATTCCAAGTGTGGCATGTCGCTTTGGCACCGTGCAGCGAAAGGTCCTTAATTTTCTTCAGGCAATATTTGCTTTGGCATATTCTCCTCCTAATCGATCGAACACTCGTCTATTGCAAGCCATGGATCAAGCAGAGCTTGCGCGAGTTTTTCAAATGTTTGATCGAAACGGGGATGGGCGAATCACACGGAAGGAGCTGAGTGACTCGTTGAAAAACCTGGGAATCACGATCTCGGAGCAAGACTTGACCCAAATGATCGAGAAAATCGACGTAAACGGAGACGGGTACGTGGACATAGACGAGTTCGGGGAGTTGTACCAAACGATAATGGACGAGAAAGATGAGGAGGGGGATATGAGGGAAGCATTCAACGTGTTCGACCAAAATGGAGATGGGTTCATCACGGGAGAAGAATTGAGCGCGGTGTTGTGCTCTTTAGGGCTAAAGCATGGCAAAACCATAGATTATTGCATGAGCATGATCAAGAAAGTGGACGTGGATGGCGATGGAATGGTTAACTTCCAAGAGTTTAAGCAAATGATGAAGGAGGGAGGTTTTGTCTCACCTTATTTAATTTGA 615 0.4634 MFPAEQEHALPAIPSVACRFGTVQRKVLNFLQAIFALAYSPPNRSNTRLLQAMDQAELARVFQMFDRNGDGRITRKELSDSLKNLGITISEQDLTQMIEKIDVNGDGYVDIDEFGELYQTIMDEKDEEGDMREAFNVFDQNGDGFITGEELSAVLCSLGLKHGKTIDYCMSMIKKVDVDGDGMVNFQEFKQMMKEGGFVSPYLI 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03490 204 Pfam EF-hand domain pair 130 194 IPR002048 GO:0005509
Spst1g03490 204 Pfam EF-hand domain pair 57 119 IPR002048 GO:0005509
Spst1g03490 204 ProSiteProfiles EF-hand calcium-binding domain profile. 89 124 IPR002048 GO:0005509
Spst1g03490 204 ProSiteProfiles EF-hand calcium-binding domain profile. 53 88 IPR002048 GO:0005509
Spst1g03490 204 Gene3D - 19 127 - -
Spst1g03490 204 CDD EFh 130 194 IPR002048 GO:0005509
Spst1g03490 204 ProSitePatterns EF-hand calcium-binding domain. 139 151 IPR018247 -
Spst1g03490 204 ProSiteProfiles EF-hand calcium-binding domain profile. 164 199 IPR002048 GO:0005509
Spst1g03490 204 ProSitePatterns EF-hand calcium-binding domain. 177 189 IPR018247 -
Spst1g03490 204 ProSitePatterns EF-hand calcium-binding domain. 102 114 IPR018247 -
Spst1g03490 204 ProSiteProfiles EF-hand calcium-binding domain profile. 126 161 IPR002048 GO:0005509
Spst1g03490 204 FunFam Calmodulin-like protein 3 53 122 - -
Spst1g03490 204 SMART efh_1 57 85 IPR002048 GO:0005509
Spst1g03490 204 SMART efh_1 130 158 IPR002048 GO:0005509
Spst1g03490 204 SMART efh_1 168 196 IPR002048 GO:0005509
Spst1g03490 204 SMART efh_1 93 121 IPR002048 GO:0005509
Spst1g03490 204 FunFam calmodulin-like protein 3 124 197 - -
Spst1g03490 204 Gene3D - 128 196 - -
Spst1g03490 204 CDD EFh 57 114 IPR002048 GO:0005509
Spst1g03490 204 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 130 194 - -
Spst1g03490 204 SUPERFAMILY EF-hand 54 194 IPR011992 -
Spst1g03490 204 ProSitePatterns EF-hand calcium-binding domain. 66 78 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03490 Spst-Chr1 43951589 43953111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03490 53 200 EF-hand Containing Proteins AT3G07490 77.027 1.53e-70 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03490 K13448 - gmx:100806637 273.092