Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03489 ATGTGGGCTCTTCGTCGAGCTTCCATCCCTCTCAGGACCCGAGGGTTTAAAGTGAGAACTTCTTGTGTCAAATTGGCGCGAACTAGTTGTGTGGAAGAAGAAAGTGGTATCACTGAGTCTCATGGAATAACTTATGGTGGATTGCTGTTGCAGAATACGGGTTTCCATTCGGGGCAAAGTGCATTCCTGAATTTTACTGTGGGGAGACGCGAACTTTCTTCGAGTAGCACCAAAGAGGATGATGATTTGGAGGATGGGTTTTCCGAGCTGGAGACACCTGCTGGCGATGGAAATGAAAGTGACAATCTGTTAGCTTCTGATGCTGACCTATCGGATGACGATGGTGACAAGAAGAATGTCGAGGAGCCACACAACGAGGTTGATGAGGCGGTCCAGCAGAAAGGTCGTGGAAGGGTTGAATCGAAACTATTCAATGAGATCGTGAATGTGCCGGTTGTGTCTATTCATCTGGCTCTGGAGAAGTGGTTAGAAGAAGGGAATGAACTAAAAAGAGAGGAGGTCTCACAAGCCATGGTTTGTCTTCGAAGGCGAAAGATGTTTGTGAAGGCTTTGAAGCTCTCAGAGTGGCTTGAATCAAAAAATCAGTTTGAGTTTATTCAAAGAGATTATGCAAGTCGACTTGATTTAATTGCCAAAACTCGAGGCTTACATAAGGCAGAGTTTTACATTGAGAGTATTCCAGAATCTTGTAGCAGAGACATAATGTACGGGACTTTATTGGCTAACTGTGTCAGTCAGAACAGTGTGAAGAAAGCAGAGGAAGTTTTCAATAAAATGAAGGATTTGGGTATTCCTGTGACAGTATTTGCTTGCAATCAGTTGCTACTTCTGTACAAGAGGAATGACAAGAAGAAAATAGCTGATGTTTTGTTGTTGATGGAAAATGAGAATATCAAACCTTCTTCTCTTACTTACACAATCTTAATAGACACAAAGGGCCAGTCAAGAGATATTGATGCCATGGATCAAATTGTTGATAGAATGAAAGCTCAAGGCATTGAACCAGACATCAAAACACAGGCTGTTTTGGCTAGACATTACATCACGGCTGGACTTAAAGGTAAAGCTGAAACCTTACTGAAACAGATGGAAGGTGAAAACTTAAAACAGGATCGGTGGCTATCCCACATTTTGCTTCCTCTCTATGCAAACCTAGGAAAGGTGGATGAAGTGGGAAGAATTTGGAATGTCTGTGAGACAAATCCTAGGTATGACGAGTGTCTGGCGGCAATTGAAGCTTGGGGAAAGTTGAATAAAGTTGATGAAGCAGAGAAAGTTTTTGAGGCAATGATAAAGAAATGGAAGCTTTCTTCCAAGACAGTCTCTGTACTACTGAAGGTTTATGCAAATAATAAGATGCTAATGAAGGGTAAGGATCTTATAAAGCGAATGGGAGATAGTGGGTGCCGAATAGGCCCATTGACCTGGGATGCAATAGTGAAACTTTATGTCCGAGCCGGGGAAGTGGAGAAGGCAGACTCCGTTCTTCAGAAGGCTGCCCAGCAGAGCCAGATGAAGCCAATATTTTCTACCTACCTTACTATTTTGGAGCAGTATGCCGAGAGGGGTGACATCCATAACGCAGAAAAGATTTTCCTTAGAATGAAACAAGCTGATTATCCATCTAAACCAAAGATGTACCAAGTTCTAATGAACGCCTATATAAATGCGAAGGTTCCAGCCTACGGGATTAGGGACAGGTTAAGAGCTGACGACATATTGCCTAATAGAGCTTTGGGAAACCTATTGATTCAAGTTGACGGATTTAGGAAAAATCCAGTCTTCGATTTACTTGATTGA 1821 0.4245 MWALRRASIPLRTRGFKVRTSCVKLARTSCVEEESGITESHGITYGGLLLQNTGFHSGQSAFLNFTVGRRELSSSSTKEDDDLEDGFSELETPAGDGNESDNLLASDADLSDDDGDKKNVEEPHNEVDEAVQQKGRGRVESKLFNEIVNVPVVSIHLALEKWLEEGNELKREEVSQAMVCLRRRKMFVKALKLSEWLESKNQFEFIQRDYASRLDLIAKTRGLHKAEFYIESIPESCSRDIMYGTLLANCVSQNSVKKAEEVFNKMKDLGIPVTVFACNQLLLLYKRNDKKKIADVLLLMENENIKPSSLTYTILIDTKGQSRDIDAMDQIVDRMKAQGIEPDIKTQAVLARHYITAGLKGKAETLLKQMEGENLKQDRWLSHILLPLYANLGKVDEVGRIWNVCETNPRYDECLAAIEAWGKLNKVDEAEKVFEAMIKKWKLSSKTVSVLLKVYANNKMLMKGKDLIKRMGDSGCRIGPLTWDAIVKLYVRAGEVEKADSVLQKAAQQSQMKPIFSTYLTILEQYAERGDIHNAEKIFLRMKQADYPSKPKMYQVLMNAYINAKVPAYGIRDRLRADDILPNRALGNLLIQVDGFRKNPVFDLLD 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03489 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Spst1g03489 606 SUPERFAMILY TPR-like 384 552 IPR011990 GO:0005515
Spst1g03489 606 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 415 600 - -
Spst1g03489 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 514 IPR002885 -
Spst1g03489 606 Pfam Pentatricopeptide repeat domain 508 561 IPR002885 -
Spst1g03489 606 MobiDBLite consensus disorder prediction 73 133 - -
Spst1g03489 606 NCBIfam pentatricopeptide repeat 311 344 IPR002885 -
Spst1g03489 606 NCBIfam pentatricopeptide repeat 241 274 IPR002885 -
Spst1g03489 606 Gene3D Tetratricopeptide repeat domain 419 601 IPR011990 GO:0005515
Spst1g03489 606 MobiDBLite consensus disorder prediction 110 133 - -
Spst1g03489 606 Pfam Pentacotripeptide-repeat region of PRORP 246 401 IPR033443 -
Spst1g03489 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Spst1g03489 606 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 239 414 - -
Spst1g03489 606 PANTHER OS12G0527900 PROTEIN 73 583 - -
Spst1g03489 606 Gene3D Tetratricopeptide repeat domain 238 418 IPR011990 GO:0005515
Spst1g03489 606 Pfam PPR repeat 418 440 IPR002885 -
Spst1g03489 606 Pfam PPR repeat 447 476 IPR002885 -
Spst1g03489 606 Pfam PPR repeat 482 505 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03489 Spst-Chr1 43919817 43925331 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03489 151 545 EF-hand Containing Proteins AT1G02150 25.547 3.87e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03489 - - gmx:100500196 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03489 1 43919817 43925331 Spst1g03489 1 43919817 43925331 ECH