Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03487 ATGGCTTCTCGCTTCTTCACCTCCTCTTCCTTCCATACGCGCTTTTCTTCTCTCCCTCCTACTCTCACAAAAACCAGTTCGGTTCCAATTGCGGCTACTCCAAGGGCGTTTATGTCTTCTTTCTCTACCACCGAAGCTTTTCAGAAAAGTGAAAGTTCCACAGCTTATAGTTCTGATCAAATTCAGGTTCTTGAAGGCTTGGATCCCGTGAGGAAAAGGCCCGGGATGTACATTGGAAGCACTGGCCCACGAGGGTTGCATCATTTGGTGTATGAAATTTTGGATAATGCTGTTGATGAAGCCCAAGCTGGGTTTGCTTCCAAGATTGATGTTGTTTTGCTTGCAGATGATTCTGTGAGCATTACCGACAATGGTCGCGGGATTCCTACTGACTTGCATCCAGTTACAAAGAAGTCTGCCTTGGAGACAGTGTTGACGGTCTTGCATGCTGGTGGAAAATTTGGTGGTGCCAACAGTGGGTACTCTGTTTCAGGAGGTTTGCACGGTGTTGGTTTGTCTGTTGTTAATGCCTTGTCTGAGTCACTAGAGATAACAGTTTGGCGTGATGGAATGGAATACACACAAACATATTCTCGCGGAAAGCCAGTGACTATTCTGAAAGCCCTTGTACTTCCGGATGAAAGGAAAGATATTAGAGGAACACGTGTCAGATTTTGGCCTGACAAAGAAGTGTTCACCACTGCTATTCAGTTTGATTACAACACAATAGCTGGACGCATTAGGGAGTTAGCTTTCCTCAACCCAAAGCTTACAATCACGCTTCAGAAAGAGGACAATGATCCAGATAAAGTTCAATATAACAAATATTTCTATGCTGGGGGGTTGGTTGAATATGTGAAATGGCTCAACACAGATAAGAAAGCACTTCATGATGTTTTGAGTTTTAGAAAAGAAATTGATGGCATCACAGTTGATATAGCTTTTCAATGGTGTGAAGATGCATATTCAGATACAATACTGGGATATGCTAATAGTATACGCACTATTGATGGTGGTACTCATATTGATGCCATGAAGGCTTCTATAACAAGAACGTTGAATGGCCTAGGAAAGAAGTCAAAAGTTATTAAGGATAAGGATATTACTTTAAGTGGTGAGCATGTAAGAGAGGGTCTAACATGTGTTGTCTCAGTCAAGGTCCCAAACCCTGAGTTTGAAGGACAGACAAAGGTATTACCTACTTTACGAAATCCAGAGGTGCGAAAAGTGGTTGATCAATCTATTCAGGATTATCTTACTGAGTATTTAGAATTGCATCCAGATGTACTGGATTCAATACTTTCTAAAGCTCTTAATGCTTTTAAGGCAGCTCTGGCAGCAAAAAGAGCAAGAGAATTGGTGAGACAAAAGAGTGTATTGAGATCTTCATCTCTTCCGGGAAAACTAGCTGATTGCTCATCTTCAAATCCTGAAGAATGTGAAATCTTTATAGTTGAAGGGGATTCAGCTGGAGGAAGTGCTAAACAAGGGCGTGACAGGCGCTTCCAGGCCATTCTCCCTCTGAGGGGTAAGATTCTGAATATTGAAAGGAGGGATGAAGCAGCAATGTACAAAAATGAAGAGATCCAAAATTTAATTCTTGGTCTTGGTCTCGGTGTGAAGGGAGAGGATTTTAAAAAGGATGCACTCCGGTATCATAAGATTATTATTTTGACTGATGCTGATGTGGATGGTGCTCACATCCGAACTTTGCTACTGACATTTTTCTTCAGATATCAGAAAGCTTTGTTTGATGAAGGTTGTATATATGTTGGTGTTCCACCATTGTACAAGGTTGTCAGGGGAAAACAAGTGCACTATTGCTATGATGAAGCTGACCTTAAAAAGCTTCGAAGATCATTCCCTCCTAATGCATCATACAACCTGCAAAGGTTCAAAGGGTTGGGAGAGATGATGCCTTTACAATTATGGGAAACAACCATGGATCCAGAACGCAGGTTACTAAAGCAATTAAAAGTTGAGGATGCAGCAGAAGCAAGTATTGTTTTTTCCTCTCTTATGGGTACTCAGTTAGATGTGGAGAAATGGAATGGCTTCCATATTAGCCATCCACTACAATATAAAGCACAATTTTTCTATATGGCCTGGAACGTGGAGAGGTCTGAAATGAAGCAAGGCTCCTGTTTTTTCATGGAGCCATTGATGTTACCTTCACAAGTTATCATTACTAAGCTCGTCTTTGGTCCTGCCCTTAATTGCAAAGTTAAAGTGTATCGTGATCAAACTGGGCGAGAGCGCCAAAAGAACAACTAA 2274 0.4147 MASRFFTSSSFHTRFSSLPPTLTKTSSVPIAATPRAFMSSFSTTEAFQKSESSTAYSSDQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLLADDSVSITDNGRGIPTDLHPVTKKSALETVLTVLHAGGKFGGANSGYSVSGGLHGVGLSVVNALSESLEITVWRDGMEYTQTYSRGKPVTILKALVLPDERKDIRGTRVRFWPDKEVFTTAIQFDYNTIAGRIRELAFLNPKLTITLQKEDNDPDKVQYNKYFYAGGLVEYVKWLNTDKKALHDVLSFRKEIDGITVDIAFQWCEDAYSDTILGYANSIRTIDGGTHIDAMKASITRTLNGLGKKSKVIKDKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKVLPTLRNPEVRKVVDQSIQDYLTEYLELHPDVLDSILSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEECEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVVRGKQVHYCYDEADLKKLRRSFPPNASYNLQRFKGLGEMMPLQLWETTMDPERRLLKQLKVEDAAEASIVFSSLMGTQLDVEKWNGFHISHPLQYKAQFFYMAWNVERSEMKQGSCFFMEPLMLPSQVIITKLVFGPALNCKVKVYRDQTGRERQKNN 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03487 757 Pfam DNA gyrase B 281 452 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst1g03487 757 SMART topII5 85 685 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst1g03487 757 ProSitePatterns DNA topoisomerase II signature. 484 492 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst1g03487 757 FunFam DNA gyrase subunit B 453 689 - -
Spst1g03487 757 PRINTS DNA topoisomerase II family signature 567 584 - -
Spst1g03487 757 PRINTS DNA topoisomerase II family signature 587 599 - -
Spst1g03487 757 PRINTS DNA topoisomerase II family signature 165 179 - -
Spst1g03487 757 PRINTS DNA topoisomerase II family signature 120 133 - -
Spst1g03487 757 PRINTS DNA topoisomerase II family signature 85 100 - -
Spst1g03487 757 PRINTS DNA topoisomerase II family signature 328 341 - -
Spst1g03487 757 PRINTS DNA topoisomerase II family signature 629 645 - -
Spst1g03487 757 PRINTS DNA topoisomerase II family signature 549 565 - -
Spst1g03487 757 PRINTS DNA topoisomerase II family signature 482 496 - -
Spst1g03487 757 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 46 682 - -
Spst1g03487 757 Gene3D - 53 279 IPR036890 -
Spst1g03487 757 SUPERFAMILY Ribosomal protein S5 domain 2-like 281 453 IPR020568 -
Spst1g03487 757 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 56 267 IPR036890 -
Spst1g03487 757 FunFam DNA gyrase subunit B 53 279 - -
Spst1g03487 757 FunFam DNA gyrase subunit B 280 454 - -
Spst1g03487 757 PRINTS DNA gyrase subunit B signature 650 662 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst1g03487 757 PRINTS DNA gyrase subunit B signature 666 682 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst1g03487 757 PRINTS DNA gyrase subunit B signature 252 265 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst1g03487 757 PRINTS DNA gyrase subunit B signature 280 302 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst1g03487 757 PRINTS DNA gyrase subunit B signature 372 388 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst1g03487 757 PRINTS DNA gyrase subunit B signature 532 541 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst1g03487 757 PRINTS DNA gyrase subunit B signature 237 252 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst1g03487 757 PRINTS DNA gyrase subunit B signature 436 456 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst1g03487 757 PRINTS DNA gyrase subunit B signature 422 436 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst1g03487 757 PRINTS DNA gyrase subunit B signature 56 66 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst1g03487 757 Pfam DNA gyrase B subunit, carboxyl terminus 625 678 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst1g03487 757 SMART HKATPase_4 81 231 IPR003594 -
Spst1g03487 757 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 83 230 IPR003594 -
Spst1g03487 757 NCBIfam DNA gyrase subunit B 56 679 IPR011557 GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265
Spst1g03487 757 Pfam Toprim domain 481 582 IPR006171 -
Spst1g03487 757 CDD HATPase_GyrB-like 86 271 - -
Spst1g03487 757 Gene3D - 280 457 IPR014721 -
Spst1g03487 757 ProSiteProfiles Toprim domain profile. 480 587 IPR006171 -
Spst1g03487 757 SUPERFAMILY Type II DNA topoisomerase 457 682 IPR013760 GO:0003918|GO:0005524
Spst1g03487 757 Gene3D - 458 684 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst1g03487 757 CDD TOPRIM_TopoIIA_GyrB 480 594 IPR034160 -
Spst1g03487 757 CDD TopoII_Trans_DNA_gyrase 280 436 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03487 K02470 - gmx:100779534 1206.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03487 1 43887810 43909539 Spst1g03487 1 43887810 43909539 ECH