Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03478 ATGGCGCTGCACTCCGTCTCTTCCGTTCCCCACGTGCTGCGCCTCTCCGAGCCATTCCCTTCCCTCCATAACGCTCACCTCCTCCTCGACCTCGCCCCTCTCCGCCGCAGACCCAAGCGTCGTAATCGCAAACTCACGGCCTTTCCCTCGCCATCCTCGCTCCCTCATTCCGCCGTCCAAGCCGTTCTCCACCTTGACCGCTTTGCCGACAACCGCCTCCATGCTTCGCCTGCTTCCTCTTCTTCCGATTCCAAACCGCAGGTTGCAAACTTGGAGGACATTATATCTGAGAGAGGAGCCTGTGGGGTTGGATTCATTGCCAATTTGGAGAATAAGGGATCACATGAGATTGTCAAGGATGCTTTAAATGCTTTAAGTTGTATGGAACATCGTGGTGGTTGTGGAGCTGATAATGACTCTGGTGATGGCTCAGGGCTGATGACTGCAATTCCATGGGATCTATTTGACAATTGGGCCAACAAGCAAGGGATTGCTTCCTTTGATAAGTTGCACACTGGTGTTGGAATGGTTTTTTTGCCCAAAGATGTGCAACTCCTCAATGAGGCAAAGAGAGTTATTGTAAATACTTTTCGACAAGAAGGTCTTGAGGTTCTTGGTTGGAGGTCTGTCCCTGTAAATACTTCTGTAGTAGGTTATTATGCAAAGGAGACCATGCCCAATATACAGCAGGTATTTGTTAAGATAGTGAAAGAAGAAAATGTTGATGACATTGAACGAGAACTGTACATCTGTCGGAAATTGATTGAAAAAACAGTAAGCTCAGAAAGTTGGGGGAATGAGCTTTATTTCTGTTCTTTATCAAATCAAACCATAGTTTACAAGGGGATGCTTCGCTCAGAAGTGCTTGGGTTATTTTATTCTGATCTTCAAAATGATATTTACAAGTCCGCTTTCGCCATATATCATCGAAGGTACAGCACAAATACTAGTCCTAGATGGCCTCTTGCACAACCGATGAGGCTTCTTGGTCATAATGGAGAGATCAACACCATACAGGGAAACTTGAATTGGATGCAATCACGGGAACCATCATTGAAGTCACCTGTATGGCGAGGTCGTGAAAATGAAATTCGTCCATATGGAAATCCAAAGGCATCAGACTCGGCAAATCTTGACAGTGCTGCAGAATTATTGATAAGAAGTGGTCGAAATCCTGAGGAAGCTATGATGATTCTTGTTCCAGAGGCTTATAAAAATCATCCAACTCTGACAATCAAATATCCCGAGCCTGGTGCAAAACAAAGGATTGCTATTGTGAAAGGGGTGGTGGGGGATGATCTCATTGATGTGGCGGTTGACTTCTATGACTACTACAAGGGTCAGATGGAAGCTTGGGATGGACCAGCCTTGCTTTTGTTCAGTGATGGGAAAACTGTTGGTGCATGCCTTGATCGTAATGGACTTAGACCCGCAAGGTACTGGAGAACATCGGACAATATGGTCTATGTTGCCTCTGAGGTTGGTGTTGTGCCAGTGGATGAGTCAAAGGTTGTCTTGAAAGGTCGTTTAGGTCCAGGCATGATGATAACGGTTGATTTACCGGGTGGTCAGTTAGACAGTGTTGAAGCAAGGTCCTCATTCTGTTCTCCTGCTGACACTATCCGTTCAATATGTATGTTCTGTTCTGATGTTTTTCTCCCAAATTTCATTGGACATCCTCTCAGAGTTGTAGCTTCCCACGTCTATGAGAATACAGAGGTTAAAAAACGAGTAGCCTTATCAAACCCATATGGGAAATGGATCAAGGAAAATTTGCGGTCTTTGAAGCCTGGGAACTTCCTTTCAGCCTCTGTGATGGACAATGAGGCAGTATTAAGACACCAACAGGCATTTGGCTACTCTAGTGAAGATGTCCAGATGGTGATTGAAAGTATGGCTTCTCAAGGAAAGGAGCCCACGTTTTGCATGGGAGATGATATTCCATTAGCAGCATTGTCTCAGAAACCTCACATGCTTTTTGATTATTTCAAGCAACGGTTTGCACAGGTTACAAATCCTGCAATTGATCCTCTTCGAGAAGGATTGGTTATGTCTCTTGAAGTGAATATAGGGAAGAGAGGGAATATATTGGAAATTGGGCCTGAGAATGCTTCACAGCAGGTTATGTTATCTAGTCCAGTATTGAATGAAGAGGAGCTTGAATCATTACTAAAAGACTCCCAGTTAAAACCACAAGTATTACCTACATTTTTTGACATAACTAAGGGCATTGAAGGTTCGTTGGAGAAAGCATTAAATAAGCTTTGTGAAGCTGCAGATGAAGCTGTCAGAAATGGTTCTCAGTTGCTTGTTTTATCAGACCGTTCAGAAGCACTGGAACCAACTCATCCGGCAATTCCAATTCTTCTTGCTGTTGGTACTGTTCATCAGCATTTAATCTCGAATGGCCTGCGGACATCAGCTTCAATTATAGCAGATACTGCCCAGTGCTTTAGCACTCATCAGTTCGCATGTTTAATAGGATATGGTGCAAGTGCTGTGTCGCCATACTTGGCATTCGAGACATGTCGGCAATGGCGTTTGAGTAATAAAACTGTTAATCTGATGAGGAATGGAAAGATGCCCACTGTATCAATTGAACAGGCCCAGAAGAACTATTGCAAAGCTGTAAAGGCAGGTCTTCTTAAAATTCTTTCAAAAATGGGCATCTCATTGCTTTCAAGTTACTGTGGTGCACAAATATTTGAAGTATATGGATTAGGAAAGGAAGTTGTTGATCTTGCATTCAGAGGAAGTGTGTCGAAAATTGGTGGATTGACTTTTGATGAGGTGGCAAGAGAGACTTTGTCTTTCTGGGTGAAGGCATTCTCCGAAGATACAGCTAAAAGGTTGGAAAATTTTGGATTTATACAGTCCAGACCTGGAGGGGAATATCATGCAAATAACCCAGAAATGTCAAAGTTGCTCCACAAAGCTGTTCGTCAGAAAAGTCAGAGTGCCTTTTCAGTTTATCAGCAATATTTGGCTAATCGACCTGTGAATGTTCTCCGAGATCTTCTTGAATTCAAAAGTGATCGTACTCCAATTCCCGTGGGGAAGGTTGAACCTGCTTCATCTATTGTGCAACGGTTTTGCACTGGGGGCATGTCACTTGGAGCTATTTCCAGAGAAACTCATGAAGCAATTGCAATTGCCATGAACAGATTAGGTGGAAAATCAAATTCAGGGGAAGGTGGTGAGGATCCTGTTAGGTGGAAACCACTTACAGACGTTGTTGATGGTTACTCTCCAACTCTTCCACACCTTAAAGGTCTTCAAAATGGGGATACTGCTACTAGTGCCATAAAGCAGGTTGCTTCGGGAAGGTTTGGTGTCACCCCAACATTCTTAGCAAATGCTGATCAGTTAGAAATAAAGATTGCACAAGGGGCAAAACCTGGTGAAGGAGGACAATTACCTGGAAAAAAAGTTAGCATGTATATTGCTAGGTTGAGAAATTCTAAACCAGGAGTTCCTCTTATATCTCCACCTCCTCATCATGACATTTATTCTATTGAGGACCTTGCTCAATTGATCTTTGATCTTCATCAGGTGAACCCAAAGGCAAAAGTGTCTGTAAAACTGGTGGCTGAAGCTGGAATTGGCACTGTTGCATCTGGAGTTGCAAAGGGCAATGCTGACATTATACAGATTTCAGGACATGATGGGGGAACTGGAGCAAGCCCTATAAGTTCCATCAAGCATGCAGGAGGGCCTTGGGAACTTGGTCTTACAGAATCTCACCAGACACTGATTGAAAATGGACTTAGAGAAAGGGTTATTCTCAGGGTTGATGGTGGATTTAGAAGTGGAGTTGATGTCATGATGGCAGCAATAATGGGTGCTGATGAATACGGGTTTGGTTCAGTAGCCATGATTGCTACTGGATGCGTTATGGCCCGAATTTGCCACACCAATAATTGCCCAGTTGGTGTTGCCAGTCAGAGGGAAGAGTTGCGTGCACGCTTTCCTGGTGTTCCTGGTGATCTTGTGAACTACTTTTTGTACGTAGCTGAGGAGGTAAGAGGCATATTGGCACAGCTGGGGTATGAGAAGTTGGATGATGTTATTGGCCGGACTGATTTGTTGCAACCAAGAGACATATCTCTGGCAAAAACTCAGCATCTAGATCTGAGTTATATCCTCTCTAATTCTGGGTTACCTAAATGGAGCAGTACCGAAATTAGGAACCAGGAGCCTCATACCAATGGTCCTGTTCTGGATGATAGTTTGCTAGCAGACCCAGAGATTGCAGATGCCATTCAAAATGAAAAGGTGGTTAATAAGACCATAAAAGTATACAACATTGATCGTGCTGTTTGTGGACGTATAGCTGGCGCCATTGCAAAGAAGTATGGTGATACCGGTTTTGCAGGACAGTTGAATATAACATTTACAGGAAGTGCCGGGCAGTCATTTGCATGCTTTCTGACACCTGGAATGAACATTCGCCTGGTAGGAGAGGCTAATGATTATGTTGGGAAGGGCATTGCTGGAGGTGAGTTGGTTATCACTCCAGTTGACAAGACAGGATTTGAACCGGAGGATGCAGCTATAGTAGGGAACACTTGCTTGTATGGGGCAACTGGTGGACAGGTCTTCGTTAGAGGGAGAGCTGGGGAAAGATTTGCGGTCAGAAACTCACTTGCTGAAGCTGTGGTTGAAGGCACAGGAGACCATTGTTGTGAGTACATGACAGGTGGATGTGTGGTTGTCTTGGGAAAAGTGGGTAGAAATGTAGCTGCTGGAATGACAGGAGGATTGGCATACATTCTTGATGAGGACGATACTCTCATACCCAAGGTAAACAGAGAAATTGTAAAAATCCAACGGGTATCAGCTCCTGTTGGGCAGATGCAACTGAAGAGCCTGATTGAAGCTCATGTTGAAAAAACCGGTAGTACCAAAGGTGCGGCTATTCTTAAGGAGTGGGATAAGTATTTGTCACTATTTTGGCAGCTAGTTCCACCTAGTGAAGAGGATACCCCTGAGGCAAATGCCAAGTATGACACAACTACCACAGAGCAGGTAAAAGTAGCTGCTACCAAGTAG 5052 0.4414 MALHSVSSVPHVLRLSEPFPSLHNAHLLLDLAPLRRRPKRRNRKLTAFPSPSSLPHSAVQAVLHLDRFADNRLHASPASSSSDSKPQVANLEDIISERGACGVGFIANLENKGSHEIVKDALNALSCMEHRGGCGADNDSGDGSGLMTAIPWDLFDNWANKQGIASFDKLHTGVGMVFLPKDVQLLNEAKRVIVNTFRQEGLEVLGWRSVPVNTSVVGYYAKETMPNIQQVFVKIVKEENVDDIERELYICRKLIEKTVSSESWGNELYFCSLSNQTIVYKGMLRSEVLGLFYSDLQNDIYKSAFAIYHRRYSTNTSPRWPLAQPMRLLGHNGEINTIQGNLNWMQSREPSLKSPVWRGRENEIRPYGNPKASDSANLDSAAELLIRSGRNPEEAMMILVPEAYKNHPTLTIKYPEPGAKQRIAIVKGVVGDDLIDVAVDFYDYYKGQMEAWDGPALLLFSDGKTVGACLDRNGLRPARYWRTSDNMVYVASEVGVVPVDESKVVLKGRLGPGMMITVDLPGGQLDSVEARSSFCSPADTIRSICMFCSDVFLPNFIGHPLRVVASHVYENTEVKKRVALSNPYGKWIKENLRSLKPGNFLSASVMDNEAVLRHQQAFGYSSEDVQMVIESMASQGKEPTFCMGDDIPLAALSQKPHMLFDYFKQRFAQVTNPAIDPLREGLVMSLEVNIGKRGNILEIGPENASQQVMLSSPVLNEEELESLLKDSQLKPQVLPTFFDITKGIEGSLEKALNKLCEAADEAVRNGSQLLVLSDRSEALEPTHPAIPILLAVGTVHQHLISNGLRTSASIIADTAQCFSTHQFACLIGYGASAVSPYLAFETCRQWRLSNKTVNLMRNGKMPTVSIEQAQKNYCKAVKAGLLKILSKMGISLLSSYCGAQIFEVYGLGKEVVDLAFRGSVSKIGGLTFDEVARETLSFWVKAFSEDTAKRLENFGFIQSRPGGEYHANNPEMSKLLHKAVRQKSQSAFSVYQQYLANRPVNVLRDLLEFKSDRTPIPVGKVEPASSIVQRFCTGGMSLGAISRETHEAIAIAMNRLGGKSNSGEGGEDPVRWKPLTDVVDGYSPTLPHLKGLQNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSMYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLVAEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTESHQTLIENGLRERVILRVDGGFRSGVDVMMAAIMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNYFLYVAEEVRGILAQLGYEKLDDVIGRTDLLQPRDISLAKTQHLDLSYILSNSGLPKWSSTEIRNQEPHTNGPVLDDSLLADPEIADAIQNEKVVNKTIKVYNIDRAVCGRIAGAIAKKYGDTGFAGQLNITFTGSAGQSFACFLTPGMNIRLVGEANDYVGKGIAGGELVITPVDKTGFEPEDAAIVGNTCLYGATGGQVFVRGRAGERFAVRNSLAEAVVEGTGDHCCEYMTGGCVVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNREIVKIQRVSAPVGQMQLKSLIEAHVEKTGSTKGAAILKEWDKYLSLFWQLVPPSEEDTPEANAKYDTTTTEQVKVAATK 1683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03478 1683 Pfam Glutamine amidotransferases class-II 101 411 IPR017932 -
Spst1g03478 1683 Pfam Glutamine amidotransferases class-II 438 525 IPR017932 -
Spst1g03478 1683 Gene3D Aldolase class I 599 952 IPR013785 -
Spst1g03478 1683 MobiDBLite consensus disorder prediction 1659 1683 - -
Spst1g03478 1683 FunFam Glutamate synthase, large subunit 101 534 - -
Spst1g03478 1683 Pfam Conserved region in glutamate synthase 966 1350 IPR002932 GO:0006537|GO:0015930|GO:0016638
Spst1g03478 1683 SUPERFAMILY FMN-linked oxidoreductases 608 1386 - -
Spst1g03478 1683 Gene3D - 1405 1680 IPR036485 GO:0016491
Spst1g03478 1683 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 101 535 IPR029055 -
Spst1g03478 1683 Pfam GXGXG motif 1432 1614 IPR002489 GO:0016491
Spst1g03478 1683 Pfam Glutamate synthase central domain 614 907 IPR006982 GO:0006807|GO:0015930
Spst1g03478 1683 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 1388 1663 - -
Spst1g03478 1683 CDD GltS 101 536 - -
Spst1g03478 1683 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 591 954 - -
Spst1g03478 1683 CDD gltB_C 1407 1657 IPR002489 GO:0016491
Spst1g03478 1683 Gene3D Aldolase class I 953 1404 IPR013785 -
Spst1g03478 1683 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 101 521 IPR017932 -
Spst1g03478 1683 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1400 1663 IPR036485 GO:0016491
Spst1g03478 1683 CDD GltS_FMN 969 1364 IPR002932 GO:0006537|GO:0015930|GO:0016638
Spst1g03478 1683 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 103 1664 - -
Spst1g03478 1683 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 955 1366 - -
Spst1g03478 1683 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 101 591 IPR029055 -
Spst1g03478 1683 MobiDBLite consensus disorder prediction 1667 1683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03478 Spst-Chr1 43720088 43756250 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03478 K00284 - gmx:548016 3023.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03478 1 43720088 43756250 Spst1g03478 1 43720088 43756250 ECH