Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03473 ATGATTGCTATGGATACTTTGCTCAAAACACCTAACAAGCTTGAGTTTTTGCACCCACTTCACGGTTATTCAGATAAATTGAGCAGTTTAGGCTCCTCTAGGGTGCAAAATCAGGATTTTAGGTTTGGGTCTAAGAAACCACTTGTGAGATGGGGTAAATGTGGTGGTTTGAGGGCTAGCAGCAGTGGCCTTTTGGAGCTTGTTCCTGAATTCAAGAAGGAGAATCTGGATTTTGAACTTCCTTTGTATGATTCCTCAAAGGGGGCTGTGGTGGACCTTGCGGTTGTGGGAGGGGGGCCTGCTGGGCTTGCCGTTGCACAGCAGGTTTCTGAGGCAGGGCTTTCAGTTTGTGCTATTGATCCAAACCCTAGGTTAATTTGGCCAAATAATTATGGCGTTTGGGTGGATGAGTTTGAGGCCATGGATTTGCTTGACTGCCTTGACACCACTTGGTCTGGCGCAGTCGTCTACACCGATGATAAAACAAAGAAGGATCTAGATAGGCCTTATGGTAGGGTCAATAGGAAGCTTCTGAAGTCAAAGATGCTGCAGAAATGTATCTCAAATGGTGTCAAGTTTCACCAGGCCAAAGTTAACAAGATTATTCACGAGGATACCAAATCTTTGCTGATTTGTAATGATGGTGTCACTGTTCAGGCTACCGTTGTTCTTGATGCAACTGGTTTTTCAAGATGCTTGGTTCAGTATGATAAACCGTACAACCCGGGTTACCAAGTTGCTTATGGGATTCTGGCTGAGGTTGATGAACACCCGTATGATGTAGATAAAATGCTTTTTATGGACTGGAGAGATTCTCATCTGGACAATGACAAGGAGCTGAAGCAGAGAAATAGTAGGATACCCACCTTTCTGTATGCAATGCCCTTTTCATCCACTAAGATATTTCTTGAAGAAACCTCTCTTGTAGCACGGCCTGGATTACGAATGGATGATATACAGGAAAGAATGGTTGCTAGGTTGAAACATTTGGGTATTAGAGTGAAAAGTATTGAAGAAGATGAGCACTGTGTCATCCCCATGGGTGGCCCCCTCCCAGTTCTCCCTCAAAGAGTTGTTGGCATTGGTGGTACTGCTGGGATGGTGCATCCTTCAACTGGGTATATGGTTGCAAGGACCCTGGCTGCAGCTCCTATTGTTGCTAATTCTATAGTTCAAAGCCTGGGTTCTGATAGAGGTCTTGCAGGAGGAGATATATCTGCACAAGTGTGGAAAGATTTATGGCCTATCCAAAGGCGGCGGCAAAGGGAATTCTTCTGTTTTGGTATGGACATCTTACTCAAGCTTGATTTACCAGGCACAAGGAGATTTTTTGATGCGTTTTTTGATCTGGAACCTCATTACTGGCATGGATTCTTATCATCAAGGCTGTTTCTTCCTGAGCTCATATTTTTTGGACTCTCTCTATTTTCTTGTGCTTCTAATACATCTAGGGTAGAGATTATGGCAAAGGGAACACTTCCTTTGGTAAACATGATCAACAACTTGGTAAAGGATACAGAATAA 1524 0.437 MIAMDTLLKTPNKLEFLHPLHGYSDKLSSLGSSRVQNQDFRFGSKKPLVRWGKCGGLRASSSGLLELVPEFKKENLDFELPLYDSSKGAVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYTDDKTKKDLDRPYGRVNRKLLKSKMLQKCISNGVKFHQAKVNKIIHEDTKSLLICNDGVTVQATVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVDEHPYDVDKMLFMDWRDSHLDNDKELKQRNSRIPTFLYAMPFSSTKIFLEETSLVARPGLRMDDIQERMVARLKHLGIRVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQSLGSDRGLAGGDISAQVWKDLWPIQRRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPHYWHGFLSSRLFLPELIFFGLSLFSCASNTSRVEIMAKGTLPLVNMINNLVKDTE 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03473 507 PANTHER - 59 502 - -
Spst1g03473 507 NCBIfam lycopene cyclase family protein 92 487 IPR010108 GO:0016117|GO:0016705
Spst1g03473 507 Pfam Lycopene cyclase protein 92 484 - -
Spst1g03473 507 Gene3D - 89 444 IPR036188 -
Spst1g03473 507 FunFam lycopene epsilon cyclase, chloroplastic 88 426 - -
Spst1g03473 507 SUPERFAMILY FAD/NAD(P)-binding domain 91 473 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03473 Spst-Chr1 43599155 43600678 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03473 K06443 - gmx:100810895 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03473 1 43599155 43600678 Spst1g03473 1 43599155 43600678 ECH