Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03470 ATGGCGGCTGAGAATGGGTTCGACTGCGAGAGAGTGGGAAGAGAAGAAGCAGAACACATCGAAGGGTGTTTGAGCAAGTTCATCGATGATGGCACCGTCGAAAGTCACAGATACTACTTGTCTCGCAGAACCACTCTGGAAATGCTCAGAGACAGAGGCTACTCCATCCCCTCCAACGAAATTGACCTTTCTCTCTCCCAATTCCGCCACATGCACGGCAACTCCCCCAACCCTGACCGTCTCCGCCTCTCCCTCACTCACGCCACCAACCCTTCCAAAAGGGTTTTAGTTATTTTCTGTGGGCCAGGTGCTGTGAAAGTTACAGCCATTCGGAACATTGCGGGGCAGATTGTTAATAGAGACACTTTGAGTAGCCTTATATTGATAGTGGAGAATCATGTTACTAGCCAGGCCTTGAAAGCGGTCAGTCTCTTTTCCTTCAAGGTTGAAATTTTCCAGATCACAGACTTACTAGTTAATATTACAAAGCATGTGTTGAAGCCAAAGCACGAGGTGCTGACTGATAGGCAGAAGAAAAATCTCCTGAAGAAGTTCAATGTAGAAGAAAAGCAGCTTCCCCGCTTGCTACGGACTGATGCAATTGCACGATATTATGGACTTGAGAGGGGTCAAGTAGTTAAAGTTACCTATAGTGGGGAAATCACCCAGATGCATGTCACATATCGATGTGTTTGGTGA 699 0.4692 MAAENGFDCERVGREEAEHIEGCLSKFIDDGTVESHRYYLSRRTTLEMLRDRGYSIPSNEIDLSLSQFRHMHGNSPNPDRLRLSLTHATNPSKRVLVIFCGPGAVKVTAIRNIAGQIVNRDTLSSLILIVENHVTSQALKAVSLFSFKVEIFQITDLLVNITKHVLKPKHEVLTDRQKKNLLKKFNVEEKQLPRLLRTDAIARYYGLERGQVVKVTYSGEITQMHVTYRCVW 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03470 232 SUPERFAMILY RPB5-like RNA polymerase subunit 157 232 IPR035913 -
Spst1g03470 232 Pfam RNA polymerase Rpb5, C-terminal domain 159 231 IPR000783 GO:0003677|GO:0003899|GO:0006351
Spst1g03470 232 Gene3D - 30 156 IPR036710 GO:0003677|GO:0003899|GO:0006351
Spst1g03470 232 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC1 157 232 - -
Spst1g03470 232 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 32 232 IPR014381 GO:0003899
Spst1g03470 232 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 33 160 IPR036710 GO:0003677|GO:0003899|GO:0006351
Spst1g03470 232 Gene3D - 157 232 IPR035913 -
Spst1g03470 232 PIRSF RPB5 27 232 IPR014381 GO:0003899
Spst1g03470 232 Pfam RNA polymerase Rpb5, N-terminal domain 34 116 IPR005571 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03470 Spst-Chr1 43557928 43562376 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03470 K03013 - gmx:100306033 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03470 1 43557928 43562376 Spst1g03470 1 43557928 43562376 ECH