Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03453 ATGAAGCTCATTAGCATCAACCCCAAGAACCTCAAACTCAGTCCCAAACACCTCTTTCGCTCCAAAAAGCACCGATCTTTATCCCGATCCGACCCACCTTCTTTCGGATCAGGATCCTCCTCCGATGAATCCATCCACAAGCCCGCCGCCCCCGGCGCCACCGGTTACCTCACCCCCACCAGCGTCCTCCCCGACGTCTCCGGCGACTGGTCCGATGATACAGTCGACGTCCGGTGGGACCTCGCCCAGGCCTTCCGCCTCATCGACCGCGACAACGACGGTATCGTTTCGCGCCAGGACCTCGAGGCCGTCCTCACGCGCCTCGGGGCGTCCGACGTCGCTCTCATGCTCAGCGAGGTCGATGGCGGCGCTGGCGGCTGTATAACGGTGGAGGCCCTCATGAACCACATCGGGTCGGGTCCAGAGTCCATGTCGGGTCCGGAAGAGCTCAAGGAGGCATTTGCGGTGTTTGACACGGATCGGGACGGGAGGATCTCGGCGGAGGAGCTGCTTCGAGTGTTCATGGCGATCGGCGACGAGCGATGCACGTTAGATGAGTGCCGGCGCATGATAGAGGGCGTGGACAGGAACGGGGACGGGTTCGTGTGCTTCGAGGACTTCTCTCGTATGATGGAGCTGCAGCGATGA 648 0.6173 MKLISINPKNLKLSPKHLFRSKKHRSLSRSDPPSFGSGSSSDESIHKPAAPGATGYLTPTSVLPDVSGDWSDDTVDVRWDLAQAFRLIDRDNDGIVSRQDLEAVLTRLGASDVALMLSEVDGGAGGCITVEALMNHIGSGPESMSGPEELKEAFAVFDTDRDGRISAEELLRVFMAIGDERCTLDECRRMIEGVDRNGDGFVCFEDFSRMMELQR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03453 215 Gene3D - 139 215 - -
Spst1g03453 215 MobiDBLite consensus disorder prediction 20 58 - -
Spst1g03453 215 CDD EFh 149 211 IPR002048 GO:0005509
Spst1g03453 215 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Spst1g03453 215 SMART efh_1 149 177 IPR002048 GO:0005509
Spst1g03453 215 SMART efh_1 186 214 IPR002048 GO:0005509
Spst1g03453 215 SMART efh_1 80 108 IPR002048 GO:0005509
Spst1g03453 215 ProSiteProfiles EF-hand calcium-binding domain profile. 182 215 IPR002048 GO:0005509
Spst1g03453 215 Pfam EF-hand domain pair 148 211 IPR002048 GO:0005509
Spst1g03453 215 MobiDBLite consensus disorder prediction 30 44 - -
Spst1g03453 215 ProSitePatterns EF-hand calcium-binding domain. 195 207 IPR018247 -
Spst1g03453 215 FunFam Probable calcium-binding protein CML35 133 215 - -
Spst1g03453 215 SUPERFAMILY EF-hand 76 211 IPR011992 -
Spst1g03453 215 Pfam EF-hand domain 81 109 IPR002048 GO:0005509
Spst1g03453 215 CDD EFh 80 175 IPR002048 GO:0005509
Spst1g03453 215 ProSitePatterns EF-hand calcium-binding domain. 158 170 IPR018247 -
Spst1g03453 215 Gene3D - 72 135 - -
Spst1g03453 215 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 149 212 - -
Spst1g03453 215 ProSiteProfiles EF-hand calcium-binding domain profile. 80 111 IPR002048 GO:0005509
Spst1g03453 215 ProSitePatterns EF-hand calcium-binding domain. 89 101 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03453 Spst-Chr1 43324590 43325237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03453 12 211 EF-hand Containing Proteins AT2G41410 53.883 8.71e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03453 K13448 - gmx:100815559 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03453 1 43324590 43325237 Spst1g03453 1 43324590 43325237 ECH