Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03435 ATGACTCTTTTGCCTCGTCTCCGTATCTTCGCTACGCCTTTGCTCTCATCTTCTCTACTTTTCCAGAATGGTGGTAGAGAAATGATGACAAGAATTGGCATCAATGCCTGCTCGCTTTCTTCTACAGCTGAAGCTTCAGATTTAGAATGTGATGTGATTCATGATGATGTCAAAGAAGCAGAGAGAGCTAATGCACTTTGCATGGCTGTATCACAGCTTGCTAGTGAGTTTAGCAAGGAATCTATGTTATCTCTGCAGAAGTTTTTTGGTGTACGCCGTGCTCATGCGATATCTACAGGCTCCTTGAAGCTTGACCTAGCTCTGGGAATAGGAGGGTTGCCAAAGCGTAGGATTGTGGAAATTTATGGACGAGAAGCAGCTGGTAAGACTACACTTGCTCTTCAAATTATTAAAGAAGCCCAAAAACTTGGAGGATATTGTGCATATCTTGATGTAGAAAATGCACTGGACTTCTCCCTTGTGGAATCAATAGGTGTAAATACTGAAAACCTTCTTGTATCACATCCTGATTGTGCTGAAAATTTGTTAAGCATGGTTGATACATTAACAAAAAGTGGAGCTGTAGATGTGATTGTGATTGATAGTGTTGCTGCCCTCATTCCCAAATGCGAGCTTGATCAATTAGGAGTTAACACTAAACGTGATTATCAATCCCGAATGATGACTCAAGCACTGAGGAAAATTCACTATTCATTATCTCACTCTCAAACACTCATTATTTTCATTAATCAGATTAGATTTAGTCCAAAATCAGTTAAGGAATATGGATCTGTGGAAGAAGTCACTTGTGGTGGAAATGCCTTGAAATTCTATGCGGCTGTTCGTTTGAGACTTTCAAGAATGAGATTGATCAAAACTGAGGATAAGGTAGAGGGTGTTCTGATCTGTGCGCTAGTGGTGAAAAATAAACTAGCACCAGCAGCAACAAAAAGGGCTGAACTCGCTATCAAGTTTGGAAGAGGCTTTTGCCATGAGTCAGAGGTCTTAGATTTGGCCTGTGAACATGGAATCATTGTGAAAGATGAGGGAAACTACATTATTGAAAGGGGAAGTTTTGATAGTAGAGAAGCAGCTGAACAGTTTTTGGCTCAAAATGATGCCATTTGTGACAAGTTGGTTAGGGATATAAGAAGACTTTATCTTTAA 1167 0.4002 MTLLPRLRIFATPLLSSSLLFQNGGREMMTRIGINACSLSSTAEASDLECDVIHDDVKEAERANALCMAVSQLASEFSKESMLSLQKFFGVRRAHAISTGSLKLDLALGIGGLPKRRIVEIYGREAAGKTTLALQIIKEAQKLGGYCAYLDVENALDFSLVESIGVNTENLLVSHPDCAENLLSMVDTLTKSGAVDVIVIDSVAALIPKCELDQLGVNTKRDYQSRMMTQALRKIHYSLSHSQTLIIFINQIRFSPKSVKEYGSVEEVTCGGNALKFYAAVRLRLSRMRLIKTEDKVEGVLICALVVKNKLAPAATKRAELAIKFGRGFCHESEVLDLACEHGIIVKDEGNYIIERGSFDSREAAEQFLAQNDAICDKLVRDIRRLYL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03435 388 ProSitePatterns recA signature. 274 282 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Spst1g03435 388 Gene3D - 92 386 IPR027417 -
Spst1g03435 388 PRINTS RecA protein signature 271 299 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst1g03435 388 PRINTS RecA protein signature 151 180 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst1g03435 388 PRINTS RecA protein signature 305 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst1g03435 388 PRINTS RecA protein signature 358 375 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst1g03435 388 PRINTS RecA protein signature 185 214 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst1g03435 388 PRINTS RecA protein signature 223 252 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst1g03435 388 ProSiteProfiles RecA family profile 1. 93 252 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Spst1g03435 388 Pfam recA bacterial DNA recombination protein 65 329 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst1g03435 388 SMART AAA_5 115 295 IPR003593 GO:0016887
Spst1g03435 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 318 IPR027417 -
Spst1g03435 388 PANTHER RECA 40 385 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst1g03435 388 CDD RecA 96 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst1g03435 388 ProSiteProfiles RecA family profile 2. 262 334 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03435 Spst-Chr1 43049410 43054801 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03435 - - gmx:100777423 641.343