Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03403 ATGGCTAGCACCACAACTCACTGCCTCCAACTCCCCGGCGCCACCGCGTCGAATCACCGGAGAACATCCATTTCATGTAAGAAGAAATCGGACAAGACTGCATTCAAGGGAACAAAAGAAGGCTTCGTGGACTACGACCAAGGCCAGCACGAGGTCTCCATCAAAATATCCGGCCTCCGCAAGGACAACATCGCCACCCGCTACCGCCTCCGTGTGACCGGTAACCGCTTCCAGAAGGACTGGACGGTGTCCGAAGTCGCCGAACTCGTTCTCTCCCTCGACCTCTCCGACGACATCGACGGCGTACTCAACCATTGGATAGGCCGATTTGCACGCAAGAATTTCCCCTATCTCATTAAGGAGTTGACGCAGCGGGGGTCCATTGAACACTGTAACCGCGTCTTCCGGTGGATGAAGTTACAGAGGAACTACCGTGCGCGCAATGATATATACAACATGATGATTAGGTTGCACGCTCGACACCATCGAACGGACCATGCGCGTGGATTGTTTTTCGAGATGCAGGAATGGAGGTGTAAACCGGATGTTGAGACTTATAATGCTCTTATCAACGCACATGGTCGAGCTGGACAGTGGCGTTGGGCTTTGAATATCATGGATGACATGCTGCGTGCAGCTATTCCACCGAGTAGGTACACTTATAACAACTTGATAAATGCTTGTGGATCTAGTGGGAATTGGAAAGAAGCACTTAAGGTTTCCAAGAAAATGACAGACAACGGTGTTGGGCCTGATCTTGTTACTCACAATATTATTCTATCAGCATTTAAAAGTGGGGCTCAGTATTCAAAAGCTTTGTCTTATTTTGAATTAATGAAGGGAACTCATATTCGTCCTGACACAACTACACTAAATATTGTTATCCATTGTCTAGTAAAGCTTGGACAATATGACAAAGCTATGGATATTTTTAATTCCATGAGGGAGAAGAAGTCAGAATGTACCCCTGATGCTGTTACATTCACTAGTATCATTCACTTGTATTCTGTGTGTGGGCAAGTTAAAAATTGTGAGGCTACATTCAATATGATGCTTGCAGAAGGGCTGAAGCCTAATATAGTCTCATACAATGTATTAATAGGTGCATACGCTGCTTGTGGGATGGACAATGAGGCACTTTTGGTTTTCAATGAGATAAAAGAAAATGGTTTCCGCCCTGATGTTGTATCTTATACATCTCTCCTAAGTGCGTATGGAAGGTCACAAAAGCCCCAAAAAGCAAGGGAAATATTTGATGTTATGAAGAGAAACAAGTTGAAGCCAAACCTTGTCAGTTACAATTCATTGATTGATGCCTATGGATCTAGTGGTTTGCTGACAGATGCAATTGAAATTTTGCGAGAAATGGAACAAGATGGAATTCAGCCAAATGTTGTCTCCATATGCACCCTCTTGGCTGCCTGTGGACGATGCAGTCGGAAGGTGAAGATTGACACAGTTCTAACAGCAGCTAAGATGCGAGGAATTAAATTAAACACAGTTGCATACAATTCAGCTATAGGAAGTTATATGAGTATAGGGGAATATGATAAAGCTGTAGACATGTATAAATCTATGAGGAAGAAAAAAATTAAAACTGATTCTGTTACTTACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATATGGTGAAGCCCTATCTTTTATGGAAGAAATGATGCATCTAAAACTTCCTTTGTCCAAAGAAGCCTACTCTTCTGTCATATGTGCCTATAGCAAACAGGGCCAAATCATAGAAGCAGAATCTACATTCAACTTGATGAAATCATCTGGTTGTTACCCTGATGTCGTTACATACACCTCCATGCTTGATGCTTACAATGCAGCTGGGAATTGGGAAAAAGCTTATGCACTCTTTGAAGAAATGGAATCAAGTGGCATCAAGCTAGATACTATTGCCTGTGCAGCTCTAATGAGATCTTTTAATAAAGGTGGTCAACCGGGAAGGGTTCTCAGTCTTGCACAAAGTATGAGGGAGAATGAAATTCCTTTCAGTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCATATTACAAGATTGGAGGACGGCTGCTGATATGATCAAGTACATAGAGCCCTCACTTCCTGTAATTTCATCCGGATGTTTGAATCAGTTCCTTCATTCTTTAGGAAAAAGCGGAAAGATTGAAACTATGTTGAAGTTATTCTTCAAAATGTTGGCATCAGGTACTGATGTTAACTTAAACACTTACTCTATTTTATTGAAGAACCTTTTATCATCTGGAAATTGGAGGAAGTATTTAGAGGTATTGCAATGGATGGAGGATTCTGGAATTCATCCATCAAATGAAATGTACCATGATATATACTCCTTTTCTCAAAAATGCTGTGGGCGCGAAAATGCTGCTGTCATAAAAGAAAGACTTGAATCCTTGAAAAGAAAATCTGGGGATCAAATTTCTGCCAGCCAACCATGTGAAACTCCTGTTCTTAGTTGA 2490 0.4169 MASTTTHCLQLPGATASNHRRTSISCKKKSDKTAFKGTKEGFVDYDQGQHEVSIKISGLRKDNIATRYRLRVTGNRFQKDWTVSEVAELVLSLDLSDDIDGVLNHWIGRFARKNFPYLIKELTQRGSIEHCNRVFRWMKLQRNYRARNDIYNMMIRLHARHHRTDHARGLFFEMQEWRCKPDVETYNALINAHGRAGQWRWALNIMDDMLRAAIPPSRYTYNNLINACGSSGNWKEALKVSKKMTDNGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLGQYDKAMDIFNSMREKKSECTPDAVTFTSIIHLYSVCGQVKNCEATFNMMLAEGLKPNIVSYNVLIGAYAACGMDNEALLVFNEIKENGFRPDVVSYTSLLSAYGRSQKPQKAREIFDVMKRNKLKPNLVSYNSLIDAYGSSGLLTDAIEILREMEQDGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAKMRGIKLNTVAYNSAIGSYMSIGEYDKAVDMYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEMMHLKLPLSKEAYSSVICAYSKQGQIIEAESTFNLMKSSGCYPDVVTYTSMLDAYNAAGNWEKAYALFEEMESSGIKLDTIACAALMRSFNKGGQPGRVLSLAQSMRENEIPFSDTIFFEMVSACSILQDWRTAADMIKYIEPSLPVISSGCLNQFLHSLGKSGKIETMLKLFFKMLASGTDVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDSGIHPSNEMYHDIYSFSQKCCGRENAAVIKERLESLKRKSGDQISASQPCETPVLS 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03403 829 Gene3D Tetratricopeptide repeat domain 566 695 IPR011990 GO:0005515
Spst1g03403 829 FunFam Pentatricopeptide repeat-containing protein At2g41720 652 829 - -
Spst1g03403 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Spst1g03403 829 FunFam Os07g0213300 protein 264 378 - -
Spst1g03403 829 SUPERFAMILY TPR-like 288 659 IPR011990 GO:0005515
Spst1g03403 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Spst1g03403 829 FunFam Pentatricopeptide repeat-containing protein At2g41720 85 245 - -
Spst1g03403 829 FunFam Pentatricopeptide repeat-containing protein isoform A 459 565 - -
Spst1g03403 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Spst1g03403 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Spst1g03403 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Spst1g03403 829 NCBIfam pentatricopeptide repeat 185 217 IPR002885 -
Spst1g03403 829 NCBIfam pentatricopeptide repeat 290 321 IPR002885 -
Spst1g03403 829 NCBIfam pentatricopeptide repeat 606 640 IPR002885 -
Spst1g03403 829 NCBIfam pentatricopeptide repeat 326 360 IPR002885 -
Spst1g03403 829 NCBIfam pentatricopeptide repeat 536 566 IPR002885 -
Spst1g03403 829 NCBIfam pentatricopeptide repeat 150 183 IPR002885 -
Spst1g03403 829 NCBIfam pentatricopeptide repeat 501 534 IPR002885 -
Spst1g03403 829 NCBIfam pentatricopeptide repeat 219 252 IPR002885 -
Spst1g03403 829 NCBIfam pentatricopeptide repeat 572 605 IPR002885 -
Spst1g03403 829 NCBIfam pentatricopeptide repeat 254 288 IPR002885 -
Spst1g03403 829 NCBIfam pentatricopeptide repeat 396 429 IPR002885 -
Spst1g03403 829 NCBIfam pentatricopeptide repeat 431 465 IPR002885 -
Spst1g03403 829 NCBIfam pentatricopeptide repeat 361 395 IPR002885 -
Spst1g03403 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 744 778 IPR002885 -
Spst1g03403 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Spst1g03403 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Spst1g03403 829 SUPERFAMILY TPR-like 183 353 IPR011990 GO:0005515
Spst1g03403 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Spst1g03403 829 Gene3D Tetratricopeptide repeat domain 709 776 IPR011990 GO:0005515
Spst1g03403 829 Gene3D Tetratricopeptide repeat domain 82 243 IPR011990 GO:0005515
Spst1g03403 829 Gene3D Tetratricopeptide repeat domain 459 565 IPR011990 GO:0005515
Spst1g03403 829 Gene3D Tetratricopeptide repeat domain 317 387 IPR011990 GO:0005515
Spst1g03403 829 Gene3D Tetratricopeptide repeat domain 244 316 IPR011990 GO:0005515
Spst1g03403 829 Gene3D Tetratricopeptide repeat domain 388 458 IPR011990 GO:0005515
Spst1g03403 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Spst1g03403 829 Pfam Pentatricopeptide repeat domain 447 476 IPR002885 -
Spst1g03403 829 Pfam Pentatricopeptide repeat domain 382 441 IPR002885 -
Spst1g03403 829 Pfam Pentatricopeptide repeat domain 732 783 IPR002885 -
Spst1g03403 829 Pfam PPR repeat 254 280 IPR002885 -
Spst1g03403 829 Pfam PPR repeat 150 179 IPR002885 -
Spst1g03403 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Spst1g03403 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Spst1g03403 829 Pfam PPR repeat family 499 547 IPR002885 -
Spst1g03403 829 Pfam PPR repeat family 286 333 IPR002885 -
Spst1g03403 829 Pfam PPR repeat family 572 615 IPR002885 -
Spst1g03403 829 Pfam PPR repeat family 181 228 IPR002885 -
Spst1g03403 829 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 109 444 - -
Spst1g03403 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Spst1g03403 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03403 324 788 Glycosyltransferase AT1G05670 23.871 1.30e-39 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03403 - - gmx:100814643 1486.09