Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03377 ATGACTGTCACACCTAAGATCTCCGTCAACGATAGGAAATTGGTTGTTCATGGCAAGACCATTCTAACCGGAGTACCGGACAACGTTGTGCTGACTCCAGGATCTGGAAGTGGCCTTGTGACTGGTGCTTTTGTTGGTGCTACTGCTTCCCATAGCAAAAGTCTCCATGTGTTTCCCATCGGTGTCTTAGAGGAGCTCCGCTTCATGTGTTGTTTCCGGTTCAAGTTATGGTGGATGACTCAGAGAATGGGAACTTGTGGGAGGGATGTTCCTCTGGAAACACAGTTCATGCTTATTGAGAGCAAAGAGAGTGAAGTGGATGGAGAGAATTCTCCAACCATCTACACTGTCTTCCTTCCTCTCCTAGAAGGTCCTTTCCGAGCTGTTCTTCAAGGAAATGACAAGAACGAGATAGAGATTTGCTTCGAGAGTGGGGATAACGCGGTTGAGACTGATCAAGGCCTTCACCTAGTCTACATGCATGCTGGGACCAACCCATTTGAAGTCATCAATCAAGCAGTCAAGGCTGTGGAAAACTACATGCAAACATTTCTTCATCGTGAGAAGAAAAGGTTGCCATCTTTTCTTGACTGGTTTGGCTGGTGCACATGGGATGCTTTCTATACTGATGTCACAGCTGAGGGTGTTGAGGAAGGCCTGAAAAGTCTATCTGAGGGAGGTACACCACCACGGTTCCTCATCATAGATGATGGCTGGCAACAGATTGAAAGTAAACAAAAGGATGTTGACTGTGTTGTACAAGAAGGAGCACAGTTTGCTACTAGATTGACTGGTATTAAAGAGAATACTAAATTTCAGAAGAAAACACAGAGCAATGACCAGATATCAGGTCTGAAGCATCTAGTAGATGGAGTAAAGCAGCATCACAACGTGAAAAATGTGTATGTATGGCATGCACTAGCTGGCTATTGGGGTGGAGTGAAGCCAGCAGCAACTGGCATGGAGCATTATGACACTGCCTTGGCATATCCAGTGCAGTCACCAGGTGTGCTAGGAAACCAGCCAGACATTGTCATGGACAGCTTGGCTGTACATGGCCTAGGCCTAGTGCACCCAAAGAAGGTTTTCAATTTCTACAATGAGCTCCATGCTTACTTGGCTTCATGTGGAGTGGATGGAGTGAAGGTTGATGTGCAGAACATCATTGAGACCCTTGGTGCCGGACATGGTGGAAGAGTCTCTCTTACACGCAGCTATCATCACGCGCTTGAGGCTTCCATTGCTCGTAACTTCACTGACAATGGATGCATTGCATGCATGTGTCACAACACTGATGGGCTTTATAGCGCCAAGCAGACTGCTGTTGTGAGAGCCTCTGATGATTTCTACCCTCGTGATCCTGCTTCTCACACCATCCATATTTCATCTGTTGCATACAACTCACTTTTCCTTGGGGAGTTCATGCAACCTGATTGGGACATGTTTCATAGTTTACACCCTGCAGCAGAATATCATGCTGCAGCTCGTGCAATAGGTGGATGTCCAATTTATGTCAGTGACAAGCCAGGCAACCACAATTTTGATCTTCTCAAGAAGCTGATTCTTCCTGATGGTTCGGTTCTCCGAGCACAGTTACCAGGCAGGCCAACTCGTGATTCTCTCTTTGTTGATCCAGCCAGAGATAGGACTAGCTTGCTCAAAATCTGGAACATGAACAAATGCTCTGGAGTTGTTGGTGTATTTAACTGCCAAGGTGCAGGGTGGTGCAAGGTAGAGAAGAAAACCCGCATCCATGATACATCTCCTGGTACACTAACTAGCTCTGTCTGTGCCTCTGATGTTGATCTCATCACCCAAGTAGCAGGTGCTGAATGGGTTGGAGATACAATTGTTTATGCTTACAGATCAGGTGAGGTGATTCGGCTACCAAAGGGGGTTTCAGTTCCGGTGACACTAAAAGTTCTTGAATTTGAACTTTTCCATTTCTGTCCAATCCATGAAATAGCACCAAGTATTTCATTTGCAGCAATAGGGCTACTGGATATGTTCAACACTGGAGGAGCTGTGGAGGTGGTTGAAATTCAGAAAGCCTCTAACAGCAAACCAGAACTGTTTGCTGGTGAGATGTTATCAGAATTAACCTCTTCTCTCAGTCCTAACCGAGCAGCAACAGCAACTATTGCTCTTAGAGTGAGGGGAAGAGGCAGATTTGGAGTTTACTCCTCTCAACGCCCACTGAAGTGTGTGGTAGGTGGCATTGAAACCGATTTCAACTACGACTCAGAGACTGGATTGGCAACCTTCTCCATCCCAGTTCCTCAAGAGGAGATGTACAGATGGTCAATAGAGATCCAAGTTTGA 2322 0.4612 MTVTPKISVNDRKLVVHGKTILTGVPDNVVLTPGSGSGLVTGAFVGATASHSKSLHVFPIGVLEELRFMCCFRFKLWWMTQRMGTCGRDVPLETQFMLIESKESEVDGENSPTIYTVFLPLLEGPFRAVLQGNDKNEIEICFESGDNAVETDQGLHLVYMHAGTNPFEVINQAVKAVENYMQTFLHREKKRLPSFLDWFGWCTWDAFYTDVTAEGVEEGLKSLSEGGTPPRFLIIDDGWQQIESKQKDVDCVVQEGAQFATRLTGIKENTKFQKKTQSNDQISGLKHLVDGVKQHHNVKNVYVWHALAGYWGGVKPAATGMEHYDTALAYPVQSPGVLGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHHALEASIARNFTDNGCIACMCHNTDGLYSAKQTAVVRASDDFYPRDPASHTIHISSVAYNSLFLGEFMQPDWDMFHSLHPAAEYHAAARAIGGCPIYVSDKPGNHNFDLLKKLILPDGSVLRAQLPGRPTRDSLFVDPARDRTSLLKIWNMNKCSGVVGVFNCQGAGWCKVEKKTRIHDTSPGTLTSSVCASDVDLITQVAGAEWVGDTIVYAYRSGEVIRLPKGVSVPVTLKVLEFELFHFCPIHEIAPSISFAAIGLLDMFNTGGAVEVVEIQKASNSKPELFAGEMLSELTSSLSPNRAATATIALRVRGRGRFGVYSSQRPLKCVVGGIETDFNYDSETGLATFSIPVPQEEMYRWSIEIQV 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03377 773 Pfam Raffinose synthase or seed imbibition protein Sip1 7 756 IPR008811 -
Spst1g03377 773 Gene3D Aldolase class I 198 520 IPR013785 -
Spst1g03377 773 SUPERFAMILY (Trans)glycosidases 195 529 IPR017853 -
Spst1g03377 773 PANTHER - 1 771 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03377 Spst-Chr1 42374952 42379020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03377 1 548 Glycoside Hydrolase AT3G57520 84.153 0.0 995
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03377 K06617 - gmx:100807861 1442.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03377 1 42374952 42379020 Spst1g03377 1 42374952 42379020 ECH