Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03345 ATGAAGAAGCCAGTCATCTTCTTCTTATTCTTTTTTCTAACCCAATACCTTCTCGCAACATCATCACCTCTGAATCCCATCTCAGTCACGCTCTCCGTCGCCGACTTCGGCGCCGCCGGCGACGGCCGCCGCTACGACACCGCACCGATCCAGACGGCCATCAACTCCTGCCCTAAGGGCGGTCCCTGCCACGTCACCTTCCCGGCGCCGGGAAAATACTTGACTGCCACCGTGTTCCTCAAATCCGGCGTGGTGCTGGTCGTGGAGCCTGGCGCCACCATCCTGGGCGGCGCCAGGCTGGAGGACTACCCGAAGGAATCATGGCGGTGGTACGTGGTGGTGGCGGAGAACGCGACGGATGTGGGAATCCGCGGCGGCGGAGTGGTGGACGGTCAGGCTGCGAAATTCGTAGTGAGGGAAGATCCGAGGAAGAACGTGATGGTTAGTTGGAACCAAACTGGGACTTGCTTAGGAGACGAATGCAGACCGAGACTCATTGGATTCATTGGTTGCAAAAATGTTGAAGTTTCTAACATCACTCTCAACCAACCTGCTTATTGGTGCTTACACTTGGTGCGGAGTAACAACATATCCATTAAAGATATTGCAATTTATGGGGACTTTAACATACCAAACAATGATGGGATTGACATTGAAGACTCAAACAACACAGTAATCACTCGATGCCAAATCGATACTGGGGATGATGCAATCTGTCCAAAGTCATCCACAGGTCCTGTTTACAACCTTACAGTCACCGACTGTTGGATTCGATCCAAATCTTCTGCAATTAAACTTGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTTGTGTTTGATAATATCACTATTGTTGATTCTCATAGAGGGATTGGATTCCAGATCCGTGATGGAGGAAATGTAAGTGACATTGTATTCTCAAACATTAATATCAGCACAAGATACTATGACCCGTTATGGTGGGGGAGAGCAGAGCCTATCTATGTCACGAGTTGCCCACGAGACTCAACCTCAAAGGAGGCTTCAATCTCAGATATACTTTTCATTAACATTACTGCAAATTCTGAAAATGGCATCTTCCTGTCTGGTTCAAAGAGAGGATTGCTAAGAAATTTGAGATTCATCAACATGGACATTACTTACAGAAGGTTCACCAATTATGCGGGTGGGTTATTGGACTATAGGCCAGGATGCCAAGAGTTAGTTAAACACAGGACTGCGGGCATGATGATGGAGCACATTGAAGGGCTTGAGGTTATAAATGTTGACATGAGATGGTCAAACCATCAACTGGAGCAGTGGAATAATCCTTTAGAGTTCAGACCATCTACTGTGAATAATATTTCTTTCCATAGTTTTAATTCTGGTTTTTATACAGATAGCAAATCAAATTATTAA 1398 0.4628 MKKPVIFFLFFFLTQYLLATSSPLNPISVTLSVADFGAAGDGRRYDTAPIQTAINSCPKGGPCHVTFPAPGKYLTATVFLKSGVVLVVEPGATILGGARLEDYPKESWRWYVVVAENATDVGIRGGGVVDGQAAKFVVREDPRKNVMVSWNQTGTCLGDECRPRLIGFIGCKNVEVSNITLNQPAYWCLHLVRSNNISIKDIAIYGDFNIPNNDGIDIEDSNNTVITRCQIDTGDDAICPKSSTGPVYNLTVTDCWIRSKSSAIKLGSASWFDFKHFVFDNITIVDSHRGIGFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTSCPRDSTSKEASISDILFINITANSENGIFLSGSKRGLLRNLRFINMDITYRRFTNYAGGLLDYRPGCQELVKHRTAGMMMEHIEGLEVINVDMRWSNHQLEQWNNPLEFRPSTVNNISFHSFNSGFYTDSKSNY 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03345 465 PANTHER PECTIN LYASE-RELATED 27 422 - -
Spst1g03345 465 SMART pbh1 338 363 IPR006626 -
Spst1g03345 465 SMART pbh1 194 220 IPR006626 -
Spst1g03345 465 SMART pbh1 247 268 IPR006626 -
Spst1g03345 465 SMART pbh1 221 242 IPR006626 -
Spst1g03345 465 SMART pbh1 301 323 IPR006626 -
Spst1g03345 465 Gene3D - 17 390 IPR012334 -
Spst1g03345 465 Pfam Glycosyl hydrolases family 28 110 381 IPR000743 GO:0004650|GO:0005975
Spst1g03345 465 SUPERFAMILY Pectin lyase-like 2 394 IPR011050 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03345 28 459 Glycoside Hydrolase AT3G57790 68.100 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03345 - - gmx:100794954 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03345 1 42068822 42071808 Spst1g03345 1 42068822 42071808 ECH