Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03267 ATGGCTATTTGGTTCATCACCCTCACCCTTCTCTTCTCCTCACTCACAGCAGCCACAAACTCCGATTTCTTTGAATACATATCTCCCAATTCTCTGGGTCTGCAAAAGGAGAAGCTGCTCCACCTTCACTTCTTCTTGCATGACAATACAAGCGGGCCCAAGCCCACCGCAGTGCAAATTGCTGAGGCCCAAACGACCAACACTTCCTCCACGTTTTTCGGATTCCTGGCGATAGCCGACGACCCGTTGACCGTTGCGGCGGATCCCGGGTCGAAGGTGGTCGGAAAGGGACAAGGCCTGTACGGGTTTTCAGACCAGAATGAGGTTGCAGTAGTCATGCTCTTCAACTTCGTGTTCACGGAAGGGAAATTCAATGGCAGCACTCTGAACTTGTTGGGTCGGAATTTGATATTCAACCAGGAAAGGGAATTGGCCATTGTTGGCGGGACTGGGGTTTTCAAGTTCTCACGTGGCTATGCGGATCTGAAGACGTATAGTCTTGATAACAAAACAGGGAACGCTGTTGTGGAGTACAACATCTACGCCTTCCAGTATTATTGA 561 0.4991 MAIWFITLTLLFSSLTAATNSDFFEYISPNSLGLQKEKLLHLHFFLHDNTSGPKPTAVQIAEAQTTNTSSTFFGFLAIADDPLTVAADPGSKVVGKGQGLYGFSDQNEVAVVMLFNFVFTEGKFNGSTLNLLGRNLIFNQERELAIVGGTGVFKFSRGYADLKTYSLDNKTGNAVVEYNIYAFQYY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03267 186 PANTHER NUCLEOPORIN-RELATED 23 181 IPR004265 -
Spst1g03267 186 Gene3D - 28 182 IPR044859 -
Spst1g03267 186 Pfam Dirigent-like protein 40 182 IPR004265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03267 Spst-Chr1 41177383 41177943 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03267 - - pvu:PHAVU_001G145500g 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03267 1 41177383 41177943 Spst1g03267 1 41177383 41177943 ECH