Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03260 ATGAGTTCCACTGAGGAAGCTACAACAACAACTAAGAAGGGTGGAAGGGGCAAGCCCAAGACCACAAAGTCTGTTTCTCGCTCCTCCAAAGCCGGTCTCCAGTTCCCTGTTGGTCGCGTAGCTCGTTACCTCAAAGCCGGTCGCTATGCACAGCGTGTGGGTTCCGGTTCCCCTGTATACCTCTCTGCAGTTCTCGAATATCTTGCTGCCGAGGTTTTGGAGCTTGCGGGGAATGCTGCCAGGGACAACAAGAAGACGAGAATTGTCCCGAGGCACATTCAACTTGCGGTGAGGAACGACGAGGAATTGAGCAAGCTTATGGGGTCTGTGACTATTGCTAGCGGTGGGGTTCTGCCCAACATTCATCAGAACTTGTTGCCCAAGAAGGCGGGCAAAGGGAAATCCGAAATAGGTTCTGCTAGTCAGGAGTTTTAA 435 0.5218 MSSTEEATTTTKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLMGSVTIASGGVLPNIHQNLLPKKAGKGKSEIGSASQEF 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03260 144 CDD H2A 15 129 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst1g03260 144 Gene3D Histone, subunit A 10 137 IPR009072 GO:0046982
Spst1g03260 144 MobiDBLite consensus disorder prediction 1 31 - -
Spst1g03260 144 Pfam Core histone H2A/H2B/H3/H4 5 98 IPR007125 GO:0003677
Spst1g03260 144 Pfam C-terminus of histone H2A 101 134 IPR032454 -
Spst1g03260 144 PRINTS Histone H2A signature 23 45 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst1g03260 144 PRINTS Histone H2A signature 52 67 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst1g03260 144 PRINTS Histone H2A signature 81 95 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst1g03260 144 PRINTS Histone H2A signature 109 127 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst1g03260 144 PRINTS Histone H2A signature 67 80 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst1g03260 144 PANTHER HISTONE H2A 16 129 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst1g03260 144 SUPERFAMILY Histone-fold 26 129 IPR009072 GO:0046982
Spst1g03260 144 FunFam Histone H2A 12 136 - -
Spst1g03260 144 ProSitePatterns Histone H2A signature. 31 37 IPR032458 -
Spst1g03260 144 SMART h2a4 12 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03260 Spst-Chr1 41068442 41068960 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03260 K11251 - gmx:100818215 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03260 1 41068442 41068960 Spst1g03260 1 41068442 41068960 ECH