Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03257 ATGAAGCGAGCGTGGAAATTCTCTTCAGACGCAAGGCGAGTTCAGTTGCTGCTCTTCCAATCTCACCTCCATGGATTCCCCAAGCCTAAAACCATTACTTCCTTTCCCACCGTGCTAGCTTATCGCAAGCTCAATACGCTGTCAAACTTGGTCTCTGACCTCATTCCATTGTTCACTGACCAGGCTTGCTCTTCTCTCGAAGGGCATGTCGACAAGGTAACGACTCTGAGGGAGGAGATCCTTCGGGAAGCCTCCGACCCTCGTCGGGTTCAAAGCATTTTGGACGATAATTCTGACGCTCTCAGTCCCCGCTCCCCCGATGGATCTACGTTGCTCAAACTTATGAATCAATTGAATTCAAATCCTTCTCTTGTCCTTCAGGTGTTTAGTTGGGGAAGGAACAGCTGTATGGATGCGAAAGAGTACTCAAAGGCTATACAAGCTGCAGGTAGATCTGGGGATATTGATTTAGGTGTTAAGCTCTTTAAGGAGGCTGCTAGCAAAGGTCTCAAGACAACCAGCACTTACAATGCGCTAATGAGTGCCTTTATGGTCAATGATCTTGTTGATCGCTGTCAGTCCTTATTTTGTGATCTGAAGAGGGATCCGACTTGCAATCCTTCTATTGTCACATACAACATTCTTCTATCTGTTTTTGGTAGAATGATGCTGATTGATTACATGGAAGCAACATTCAGGGAGATACAAAAGTTAGACCTTCCCATGAACGTCAGCACTTATAATCAGTTAATTGCTGGATATATAACAGGTTGGATGTGGGATGATATGGAAAATATTTTTCAAATATTGAAGTCGGGCCCTATCAAGCCTAACACGAAAACCTACCTGCTAATGCTTCGTGGATATGCAAATTCGGGTAATGTGGAAAAGATGGAAGAGATGTATTCCTTTGTAAGGGATTATGTAAATAAAAATTCGATGTCCTCAATCAGATGTATGATATGTGCCTATTGTAGAAGTTCTGAAGCAGATAAATTTCTGTCGAAGATAGAGTTATTGTTGAAATTTATTCCAGAAAACGAGTACAAGCCATGGTTAAATGTGTTGCTGATTAAATTGTATGCTAAGGAAGTCTGGTTAGAGAAAATGGACAATGCTATAAATGAGGCATTTGAACACGGAATCTCTATAAGAACCAAGGGTATTTTGAGATGCATAATTACGGCTTATTATCAGTGCAATGCACTAGAGAAGCTAGAAAATTTTGTTAGACGTGCTGAAAGCTCTGGGTGGAGTATCTGCCGCTCCTTATATCATTGTAAGCTGGTCATGTATGGGTCACAGAAACCCTTAAATCAATTGCATGATGTCCTTGAGGAGATGGAAAATGTCAAGCTTGTTTGCACGAAGAAAACTTTATGGATATTGTACAAAGCTTACATGAACCGTGGCCAGAGTTCCATGGTTTTAAAAACACTGGGGCAAATGTTCAAGCATGGTTATGAAATTCCTTTAGCTGCATTTCCAGCATAA 1494 0.4143 MKRAWKFSSDARRVQLLLFQSHLHGFPKPKTITSFPTVLAYRKLNTLSNLVSDLIPLFTDQACSSLEGHVDKVTTLREEILREASDPRRVQSILDDNSDALSPRSPDGSTLLKLMNQLNSNPSLVLQVFSWGRNSCMDAKEYSKAIQAAGRSGDIDLGVKLFKEAASKGLKTTSTYNALMSAFMVNDLVDRCQSLFCDLKRDPTCNPSIVTYNILLSVFGRMMLIDYMEATFREIQKLDLPMNVSTYNQLIAGYITGWMWDDMENIFQILKSGPIKPNTKTYLLMLRGYANSGNVEKMEEMYSFVRDYVNKNSMSSIRCMICAYCRSSEADKFLSKIELLLKFIPENEYKPWLNVLLIKLYAKEVWLEKMDNAINEAFEHGISIRTKGILRCIITAYYQCNALEKLENFVRRAESSGWSICRSLYHCKLVMYGSQKPLNQLHDVLEEMENVKLVCTKKTLWILYKAYMNRGQSSMVLKTLGQMFKHGYEIPLAAFPA 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03257 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Spst1g03257 497 PANTHER EXPRESSED PROTEIN 43 495 IPR044179 GO:0003729
Spst1g03257 497 Gene3D Tetratricopeptide repeat domain 69 236 IPR011990 GO:0005515
Spst1g03257 497 Gene3D Tetratricopeptide repeat domain 237 312 IPR011990 GO:0005515
Spst1g03257 497 Gene3D Tetratricopeptide repeat domain 320 493 IPR011990 GO:0005515
Spst1g03257 497 Pfam PPR repeat family 172 219 IPR002885 -
Spst1g03257 497 Pfam PPR repeat family 243 291 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03257 118 369 Miscellaneous Gene Families AT4G11690 23.552 1.38e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03257 - - gmx:100816768 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03257 1 41037456 41039360 Spst1g03257 1 41037456 41039360 ECH