Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03255 ATGAAGAAAGGCAAGGGGAAGAACAGCGGCTTGTTGCCGAATTCGCTGAGGATTATCTCTCAGTGCCTTAAGACTGTGTCAACGAATGCCACCACCGTTGCTTCCACCGTGCGCTCCGCCGGCGCCTCCGTCGCCGCTTCTATTTCGTCTTCTTCTGAGGATCATAAAGATCAGGTAACCTGGGCTGGTTTTGATACACTGGAGCTTGATCAATCTAATTACAATCACGTTCTTTTACTTGGTTATCTAAATGGATTTCAAGTTCTTGATGTGGAAGATGCCTCTGGCTTCAGTGAATTGGTCTCAAAGCGTGATGGTCCAGTTTCCTTTCTACAGATGCAGCCCTTCCCTATCAATGGTGATGGCCAGGAGGGATTCAGAAAGTCACACCCTTTACTGTTGGTTGTTTCTGGGGATGATAGTAGCAACGTAAACCGGAATAGTACTTGTTTGAGTGGTTTAGGGAGGGATGATAATGTTGAGATGCTATCTGGGAACGATGTCAACACTTCAACAACTGTTCGGTTTTACTCCTTGAAATCTCACTGTTATGTTCATGTTCTGAAGTTCCGTTCTTCAGTGTGTATGATCAGATGCAGTTCAAGGATAGTAGCAGTTGGTCTTGCCACACAAATACACTGCTTTGATCCTGTAACTCTTGAGAATAAGTTCAGTGTTCTCACTTATCCTGTTCCTCAGTTAGCTGGACAAGGAACAGCTGGTGTTAATGTCGGTTATGGTCCGATGGCTGTGGCACCAAGGTGGTTGGCATATGCTTCTAACAATCCCCTGCCCTCTAATTTAGGTTGCTTGAGCCCTCAAAACATCAGTGCTTCATCGGGCATTAGTCCATCAACTACTCCAAGCAATGGTAGTTTAGTGGCTCGTTATGCAATGGAGTCCAGTAGACATTTGGCTGCTGGAATTATCAAATACTGTCAAGAGATGCTTCCTGATGGCTCCTCTTCACCCATGCCATCAAATTTAGCTGTGAAAGTCAATAGGGTTACAGGAATTGATGCAGATAATGTGGGCATGGTAGTCATTAGGGATTTTGTTTCCAGGATTATCATATCACAATTCAAAGCTCACACTAGTCCCATTTCTGCACTATGTTTTGACCCTAGTGGGACCCTTCTGGTCACTGCATCTGTCCATGGGAATAACATTAATATATTTCGTATAATGCCATCATTCACAGGCAAGAGTTCAGGAATTCCCAGCTCAAATTGGAACTCATCTCATGTGCATCTTTATAAACTTCATCGAGGAATAACACCAGCTATGATTCAAGACATCTGTTTCAGTAATTTTAGTCAGTGGATTGCAATTGTCTCATCCAAGGGTACTTGTCATCTTTTTGTTTTATCACCCTTTGGGGGTGATACTGGTTTTCGAATTATTAGTTCTGAGGGTGAAGAACCGTCCCTCCTTCCAGTTTTTCCTCTACCTTGGTGGTATACTCCTGGTTCCATTTCTTATCAGCAATCTTTGCCTCCCCCATCACCTGTTGTTCTTTCTGCGGCTAGCCGCATAAAATATAGTAGTTTTGGATGGCTTAATACTGTTCACAATCCTGCTGCCAATGTGACAGGAAAAGTTTTTGTTCCATCTGGTGCTATAGCTGCCATCTTTCATAATTCCTTATCTCACTCACGGCACCTTGTTAACTCAAAGACAAACCCCTTGGAGCATATATTGGTATATACACCTTCAGGTCACGTCGTTCAACATGAACTTCTGCCATCTGTTGGTTCAGAAACAAGTAAAAGTAGTTTGAGAAACCAGTCAACTTCAGTCCTGCATATTCAGGAGGATGAGTTCAGAGTCAAAGTTGAACCTATTCAATGGTGGGATGTATGTAGAAGGTCAGAATGGCCAGAAAGAGGGGAGACTTGCAGCAGTAGCTTTAATAGACAAGGAGGTACTGAGAGAGTTCAAGAAAAAATAGGCTATAGTGACATCCATGGATTGGATGTTTTGGGTACAAGTGATGGGGCAGGGGAAAAGATGGTAAAATCTTGTAGTGAAACTACGCAGGAGAGGTTTCATTGCTATCTGTCTAATGCGGAGGTGCAAGGGAATTTTGGAAGGTTACCCATATGGCAAAGGTCTAAGATTTGTTTCAATTCAATGAGTTGTGTGGGAGCTAGTTTCAGTGCTACTGGGGAGTATGAGATTGAAAAGGTCCCAGCTAATGAAGTTGAAATAAAGCTCAAGGAGCTGTTGCCTGTTTTCGACCATTTTCATGGCATCAGATCAAGCTGGAATGAAAGAGGCTTTACGGGGGAAAGGTACTTAAGCCCTACATCTCCTGTTCCCAATCAAGGTGACTATAAGGAGACTGCTGATGTGACAGTTATTTGTCATTCCAAACCAGCATCACTGAGTTCCACTGAAAGCTCTGATGGAGGTTCATCAAGAAGAATTGAAAATCTGCTTGACTTGGATCAAGTTGCTTCTAGTTATCAAACACATGGTGAGATATGCCTGGAAAGAATGGGGACAATCAATGTTGACCCTTCTCTACAAAACCAGATTGCGATGGAAAGTCCATCACGTGTGTTTGGAAACTCAAAACACGTCGATTTTAGTGCTGACCTTATTATTGGCAGTCCTACATTCCAGATGATAAATATAACTTCTGATGGAAGAGATTCTATAGGTGTTGGGATCAATGAGAACTCGGCATTGGTCCTAGAACATACTTCACACGAGACTGAATTTGTGGAAGTAGCCTCGGCAAAGCCAAATGAAGGTGTTGGTATATCTTTAACAGATGGCCACTGCAAAACACAGGAACATGATGGAAGTGACGTGTTAACTGAAGTTGTAACTGATGATGTTGACAGAAGCAGTAGCCACCATCAACGAGAGCAACTGAACGAGGATGGGGAGAATGATGAAATGCTTGCTGATATATTTGTCTTTTCCGAAGAAGGTAAAATATAA 2952 0.4282 MKKGKGKNSGLLPNSLRIISQCLKTVSTNATTVASTVRSAGASVAASISSSSEDHKDQVTWAGFDTLELDQSNYNHVLLLGYLNGFQVLDVEDASGFSELVSKRDGPVSFLQMQPFPINGDGQEGFRKSHPLLLVVSGDDSSNVNRNSTCLSGLGRDDNVEMLSGNDVNTSTTVRFYSLKSHCYVHVLKFRSSVCMIRCSSRIVAVGLATQIHCFDPVTLENKFSVLTYPVPQLAGQGTAGVNVGYGPMAVAPRWLAYASNNPLPSNLGCLSPQNISASSGISPSTTPSNGSLVARYAMESSRHLAAGIIKYCQEMLPDGSSSPMPSNLAVKVNRVTGIDADNVGMVVIRDFVSRIIISQFKAHTSPISALCFDPSGTLLVTASVHGNNINIFRIMPSFTGKSSGIPSSNWNSSHVHLYKLHRGITPAMIQDICFSNFSQWIAIVSSKGTCHLFVLSPFGGDTGFRIISSEGEEPSLLPVFPLPWWYTPGSISYQQSLPPPSPVVLSAASRIKYSSFGWLNTVHNPAANVTGKVFVPSGAIAAIFHNSLSHSRHLVNSKTNPLEHILVYTPSGHVVQHELLPSVGSETSKSSLRNQSTSVLHIQEDEFRVKVEPIQWWDVCRRSEWPERGETCSSSFNRQGGTERVQEKIGYSDIHGLDVLGTSDGAGEKMVKSCSETTQERFHCYLSNAEVQGNFGRLPIWQRSKICFNSMSCVGASFSATGEYEIEKVPANEVEIKLKELLPVFDHFHGIRSSWNERGFTGERYLSPTSPVPNQGDYKETADVTVICHSKPASLSSTESSDGGSSRRIENLLDLDQVASSYQTHGEICLERMGTINVDPSLQNQIAMESPSRVFGNSKHVDFSADLIIGSPTFQMINITSDGRDSIGVGINENSALVLEHTSHETEFVEVASAKPNEGVGISLTDGHCKTQEHDGSDVLTEVVTDDVDRSSSHHQREQLNEDGENDEMLADIFVFSEEGKI 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03255 983 MobiDBLite consensus disorder prediction 948 968 - -
Spst1g03255 983 SUPERFAMILY WD40 repeat-like 162 454 IPR036322 GO:0005515
Spst1g03255 983 SMART WD40_4 412 455 IPR001680 GO:0005515
Spst1g03255 983 SMART WD40_4 354 394 IPR001680 GO:0005515
Spst1g03255 983 SMART WD40_4 181 216 IPR001680 GO:0005515
Spst1g03255 983 Pfam Breast carcinoma amplified sequence 3 501 744 IPR022175 -
Spst1g03255 983 Gene3D - 22 459 IPR015943 GO:0005515
Spst1g03255 983 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 2 964 IPR045142 GO:0006914
Spst1g03255 983 MobiDBLite consensus disorder prediction 948 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03255 Spst-Chr1 40996602 41002077 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03255 - - gmx:100785780 1579.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03255 1 40996602 41002077 Spst1g03255 1 40996602 41002077 ECH