Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03250 ATGGCGATTAAAGAAGATGTGGAGGATGGCACGCAGAAAGGAATCAGAGAGCCACTTGTGGGGAATCAGAACCTTGCCCATGCAAGCAAAGGGCATTCATGGATGGTTTACTTTAGTACATTTGTTGCAGTGTGTGGATCTTATGAATTCGGGACTTGTATTGGATATTCATCTCCCACTCAAGATGCTGTCAGGAAGGATCTCAGTCTGTCTTTGGCAGAGTACTCCTTGTTTGGCTCCATCTTGACTTTTGGTGCGATGGTTGGCGCAATAACGAGTGGGCCTATTGCTGATTTTATTGGACGTAAAGGGGCAATGAGAGTGTCAAGTGCTTTCTGTGTTGCAGGGTGGCTCATAATTTACTTTGCTGAGGGCCCAGTGTCTTTGGACATTGGGAGGCTAGCAACAGGATATGGAATGGGAGTTTTTTCATATGTGGCTCCTGTCTTTGTAGCAGAAATTGCACCACAAGAACTCCGTGGGACTCTGACTACCTTAAATCAGTTCATGATTGTTTCTGCTGTCTCGGTGTCATTCATAATTGGAAATGTACTTTCATGGAGGACTTTAGCTTTAACCGGTCTGTCTGACATTGAAGAGAGATATGATCTAAGTAGTGCTTGTAAGGCTTTGATAGTCTCCACCTTACAAGCTAGCATTGTGGCATTGAGCCTCATTCCCATTGCTGTATTGCTTTTGGGTCTGTTTATCATTCCGGAGTCTCCTAGATGGCTGGTAAGAAATTATTCTACATATGCATGTTTTCATAAGAAGGCAATATGCAGTGGTTTGCATAACATGAAGAGTACTAACAAACAATTATGGCAGGCAAAGAGAGGACGTCGAAAAGATTTTGAGACAGCACTGCAAATACTTCGTGGAAAAGATACTGATATTTCTGAGGAGGCAGCGGAAATTCAGATTGGAATAGGTCTTATGGTCTGCCAGCAGCTTGGGGGGATCAATGGTATTTGCTTTTATGTCAGCAGTACTTTTGAGCTTGCAGGATTTTCTGCCACCATCGGGACTATAACATATGCTTGCCTTCAGATTGTGGTCACAGGTCTTGGAGCAGCCTTCATAGATAAAGCTGGCAGGAAGCCCCTACTTCTATTATCCGCATCAGGAATGGTCGCAGGATCATTATTTGCAGCAGTTGCATTCTATCTCAAGGTTCACGACGTGGGTGTTGCGGCTGTTCCAGCACTTGCGGTAACAGGCGTACTGGTCTACATAGGATCATTTTCAATAGGAATGGGAGCTGTTCCATGGGTTTTGATGTCTGAGATATTTCCTGTGAATATTAAAGGTCTGGCAGGAAGTGTGGCCACATTAACGAACTGGTTTGGTGCATGGTTATGCTCCTATACTTTCAACTTCCTCATGAGCTGGAGCTCCTATGGTACCTTCATTCTTTATGCGGCAATTAATGCACTGGCTATATTATTTATAATTGTTATGGTGCCGGAAACGAAGGGTAAAAGCTTGGAACAATTACAAGCAGCCATTAATTCATAA 1518 0.4361 MAIKEDVEDGTQKGIREPLVGNQNLAHASKGHSWMVYFSTFVAVCGSYEFGTCIGYSSPTQDAVRKDLSLSLAEYSLFGSILTFGAMVGAITSGPIADFIGRKGAMRVSSAFCVAGWLIIYFAEGPVSLDIGRLATGYGMGVFSYVAPVFVAEIAPQELRGTLTTLNQFMIVSAVSVSFIIGNVLSWRTLALTGLSDIEERYDLSSACKALIVSTLQASIVALSLIPIAVLLLGLFIIPESPRWLVRNYSTYACFHKKAICSGLHNMKSTNKQLWQAKRGRRKDFETALQILRGKDTDISEEAAEIQIGIGLMVCQQLGGINGICFYVSSTFELAGFSATIGTITYACLQIVVTGLGAAFIDKAGRKPLLLLSASGMVAGSLFAAVAFYLKVHDVGVAAVPALAVTGVLVYIGSFSIGMGAVPWVLMSEIFPVNIKGLAGSVATLTNWFGAWLCSYTFNFLMSWSSYGTFILYAAINALAILFIIVMVPETKGKSLEQLQAAINS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03250 505 PRINTS Sugar transporter signature 405 426 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst1g03250 505 PRINTS Sugar transporter signature 316 326 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst1g03250 505 PRINTS Sugar transporter signature 130 149 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst1g03250 505 PRINTS Sugar transporter signature 428 440 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst1g03250 505 ProSitePatterns Sugar transport proteins signature 1. 93 110 IPR005829 GO:0016020|GO:0022857|GO:0055085
Spst1g03250 505 ProSiteProfiles Major facilitator superfamily (MFS) profile. 39 492 IPR020846 GO:0022857
Spst1g03250 505 ProSitePatterns Sugar transport proteins signature 1. 357 374 IPR005829 GO:0016020|GO:0022857|GO:0055085
Spst1g03250 505 Pfam Sugar (and other) transporter 55 501 IPR005828 GO:0016020|GO:0022857|GO:0055085
Spst1g03250 505 CDD MFS_GLUT6_8_Class3_like 37 498 IPR044775 GO:0008643|GO:0051119
Spst1g03250 505 SUPERFAMILY MFS general substrate transporter 40 499 IPR036259 -
Spst1g03250 505 Gene3D MFS general substrate transporter like domains 29 505 IPR036259 -
Spst1g03250 505 PANTHER - 29 500 - -
Spst1g03250 505 NCBIfam sugar porter family MFS transporter 32 498 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03250 Spst-Chr1 40968848 40973054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03250 1 504 Organic Solute Cotransporters AT5G18840 49.444 8.77e-172 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03250 K03444 - jre:108994500 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03250 1 40968848 40973054 Spst1g03250 1 40968848 40973054 ECH