Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03248 ATGATGACAGACGAGGAACTGATACAGAAAGTTGAAGACTTAACCATCAACGCCCAACAGCACCAGTTGGAGACTCTTGGCTCGATCCTTCTTCATAATGGCACCGTGCGCTATCTTCAATCCTTCAATAAAGGTCCTCTTCCTCTTGATCGCTCCACTTTCACACGTGTCGTGCCCCTGTCTTCCTATGAAGACTACGTGGACCACATTAACCACATGGCAGATGGGAAAGATGAACCCTTTCTCTCCGTTGACCCTCTCCGCTGCTTCTTTTACAGTTCGGGAACAAGTTCAAGCACCATGAAACCGAAATTGATCCCTTACTTTGATTCAAGCCTTTCTAAAGCTGCCTCCTTTATTGGTCACCGAGGCAGTGTTGCTATTCTTCGAAGGGTATTCCCTCCTAGACCTGAAGTGAACAAGATCCTATGGTTTCTCTATGCTGACAATATTACTACTACTAAATGTGGCTTGAAAGTCATGGCTGCTTCCACATACCCTTTGCAAAGTGGTAATGCTACCCCTCAGCAACTTGCTACCTTTTCCAGTCCCCTAGAAGTGATTCTTGGATCTCATGTTGAGCATCAAATGTACTGCCACCTTCTATGTGGCCTTAGGAACCTTGATGTTATAGATGGAATATCAACCCCTTATGCCATAGGCTTGATCAAAGCATTTGGTCTCCTGGAGTCCAAGTGGGGGCAACTATGTGATGATCTTGACCACGGATTTCCATGCAATGAAATTTCTGAGGGGGCAATGAGGGAAGCTGTGACTAAGACACTTGGTGGACCTCAACCAGAATTGGCAAATAGAATAAGGTTAATCTGTGAAGGTAACAATTGGGGTGGAATTGTGTATAGATTGTGGCCAAACACTCGTTATATCAAGTGTGTTACCACTGGAAGCATGAAGCAATACTACCAAAAGCTCAAGCACTACGCAGGAGAGGTACCTATTGTAGGAGGAGATTACTTTGCTTCAGAATGCTGTCTCGGTTTAAATTTGGACATAATGCAACCCCCTGAGACAACACGGTTTGTGATACTTCCAACTTTTGCCTACTTTGAGTTTCTTCCATTTAACATGAATGAGGACAATGTTAGCAAGGAAACAGTGGACCTTTGCAGTGTGGAGGTTGGGAAGATGTATGAAGTGATTGTTACTACTTATAGAGGATTTTATCGCTACCGTTTGGGAGATGTAGTGAGAGTTGTTGGTTTCCATAACTCATCACCAGAGGTAGAGTATGTGATGAGAGCACCTAAAACTACTGCTGAGATTGTAACTGAGAAGGACTTGATTACAGCAGTTGAAAATTTTCAGCTTGCACTTAGAGATGCTATGAGAATTGAGATTGTTGAGTTTGCAAGTTTCTTGGACCAGGTGTCAATAGCAAAGCAGTTGAAGGTATTTCTGGAAGTCCAAGAGGAATCTAATTTTCTGGAGGGTAAGCTTGAGGAATCGGTTAAAACTTTTAGAAGTTGTATCTCCTCTCTCGAGAGTGGCTTGGGAGCTATATACAGGGTGCAGAAGGATAAAGGTCAACTAAGAAACTTACTGTTATTCATCGTAAGGCCTGGAGCTTTTGATCAATTATCAGAATTAGCCATTCAGAATGGGACATCAGCTAGTCAATATAAACCACCCAAGATTATAAGGAATCATGAAGTTGTCAAACTCTTTGAAAATTTAGCCATTGCGACAATATCATGTGATGGTTAA 1725 0.4255 MMTDEELIQKVEDLTINAQQHQLETLGSILLHNGTVRYLQSFNKGPLPLDRSTFTRVVPLSSYEDYVDHINHMADGKDEPFLSVDPLRCFFYSSGTSSSTMKPKLIPYFDSSLSKAASFIGHRGSVAILRRVFPPRPEVNKILWFLYADNITTTKCGLKVMAASTYPLQSGNATPQQLATFSSPLEVILGSHVEHQMYCHLLCGLRNLDVIDGISTPYAIGLIKAFGLLESKWGQLCDDLDHGFPCNEISEGAMREAVTKTLGGPQPELANRIRLICEGNNWGGIVYRLWPNTRYIKCVTTGSMKQYYQKLKHYAGEVPIVGGDYFASECCLGLNLDIMQPPETTRFVILPTFAYFEFLPFNMNEDNVSKETVDLCSVEVGKMYEVIVTTYRGFYRYRLGDVVRVVGFHNSSPEVEYVMRAPKTTAEIVTEKDLITAVENFQLALRDAMRIEIVEFASFLDQVSIAKQLKVFLEVQEESNFLEGKLEESVKTFRSCISSLESGLGAIYRVQKDKGQLRNLLLFIVRPGAFDQLSELAIQNGTSASQYKPPKIIRNHEVVKLFENLAIATISCDG 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03248 574 Pfam GH3 auxin-responsive promoter 11 556 IPR004993 -
Spst1g03248 574 Coils Coil 4 24 - -
Spst1g03248 574 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 3 564 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03248 Spst-Chr1 40960045 40962559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03248 8 569 EF-hand Containing Proteins AT1G23160 31.993 1.06e-94 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03248 K14487 - gmx:100786829 1010.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03248 1 40960045 40962559 Spst1g03248 1 40960045 40962559 ECH