Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03243 ATGAATTTCTTCACATCAATTTTCTCCTACTCCGACAATGCGCACCAGATCGAATTGCAAGAGGAAGCGAATCGCGATTCCTTGCCGCCCCAGCGCCGATCCGTTTCCTCCGGCGCGGGCGCCGGCGCGTGGGAAATCGGTGGTCTTTGGAAAACACTGAGCGCGAAATCGGAATCCATTATAGAGATATACCGTCGTGACCTGCAGGAATTCGGCACCGGTTTGAAGAAGGAGATTGAGGTGGCTCACGGTTCTCTAGGGACGGTGGGTCACGTCATCGACCAGTTCGGGAACACCGTGGCGGAAGGCACCGCTCACATCATATCTCATGGCAAGGACGCCATGGTCCTCGATTCTGAGTCCTGGAATAATGATAATACGAAAAACAAGCACGGTACGGAAAAGAAGAACTTCAATTCGAAGCGCTACAGTAGGTTTGACGCTCAGGTTGGGGCCATTCAGGTTGATGTTAGTAGTTACACCGAAGTGCCTGAGGATTTGGATGGGTATGAGAAGTGGAAATCGGGGTTTTCGTTGGAGGGGAAGAGAGAGGAAATGGAGGTGTTGCTAAGAGAGAATGAGGGTATGGAGAGTGTTTACAAGGGGGTTGTGCCTAATGTTGTTGACCGTGATACGTTTTGGTGTAGGTATTATTATAGAGTTTATAGGTTAAAGAAAGCTGAGGATGTGAGGGTCAGGCTCGTGAGGAGAATGACGAGGGAAGACGAGGAGTTGAGTTGGGATGTTGTTGAAGAAGATGAGGAGGAGGAGGATAATGAGAATAATGTGGAGAAAGAAGGATATTATACTGGAATAAAGAGATTGAATGTGGAACAGATGTATAAGTCTTGTGAGGAGGGGTCTAAGGAAGAAAAGAAAGGTAATTTATTGCAAAGCGAGGGAATCGGTGATAAGAAGGATGAGACTGTTGAAGAATCAAAGGTTGACAAGAGTAAAAAGGAGATGGATTATGGGAGCAAAAAAAGTGTGGACGAAGTGGATGACACTGATAACATGAATGATTCTGATAAGAAAGTGATTATGGAAAGGAAGGTTGATGATGGAAAAAATTCATTGGTTGCAAATAAGCACCCTGGGAATGAGAAGGAGGAGGAGTTTGAGTGGGATGAGATTGAGAATCTTAGTAGAATTGATGAAGAGAAGGCAACTCAGACAGGGAGCCCAACCAAAGTTGATTTGCGTAAGCGCCTCAGTACCGCACAAGAAGAAGAGGACTTGAGTTGGGACATTGAAGACGATGATGATTAG 1269 0.4602 MNFFTSIFSYSDNAHQIELQEEANRDSLPPQRRSVSSGAGAGAWEIGGLWKTLSAKSESIIEIYRRDLQEFGTGLKKEIEVAHGSLGTVGHVIDQFGNTVAEGTAHIISHGKDAMVLDSESWNNDNTKNKHGTEKKNFNSKRYSRFDAQVGAIQVDVSSYTEVPEDLDGYEKWKSGFSLEGKREEMEVLLRENEGMESVYKGVVPNVVDRDTFWCRYYYRVYRLKKAEDVRVRLVRRMTREDEELSWDVVEEDEEEEDNENNVEKEGYYTGIKRLNVEQMYKSCEEGSKEEKKGNLLQSEGIGDKKDETVEESKVDKSKKEMDYGSKKSVDEVDDTDNMNDSDKKVIMERKVDDGKNSLVANKHPGNEKEEEFEWDEIENLSRIDEEKATQTGSPTKVDLRKRLSTAQEEEDLSWDIEDDDD 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03243 422 MobiDBLite consensus disorder prediction 286 371 - -
Spst1g03243 422 PANTHER SYNAPSE-ASSOCIATED PROTEIN 30 416 - -
Spst1g03243 422 Coils Coil 224 244 - -
Spst1g03243 422 Pfam BSD domain 173 229 IPR005607 -
Spst1g03243 422 MobiDBLite consensus disorder prediction 286 422 - -
Spst1g03243 422 ProSiteProfiles BSD domain profile. 173 225 IPR005607 -
Spst1g03243 422 Coils Coil 179 199 - -
Spst1g03243 422 SMART wurzfinal6 173 225 IPR005607 -
Spst1g03243 422 Gene3D BSD domain 135 234 IPR035925 -
Spst1g03243 422 SUPERFAMILY BSD domain-like 143 230 IPR035925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03243 Spst-Chr1 40933125 40934393 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03243 - - pvu:PHAVU_001G147700g 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03243 1 40933125 40934393 Spst1g03243 1 40933125 40934393 ECH
Spst1g03243 1 40933125 40934393 Spst7g01177 7 36275552 36277078 PCT