Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03211 ATGGCAAATCACTCAAGCTTCAGCGGTCGCAGTGGAGTTCGAGTGGTGGTCACCGGCGATCGCGCCACCGGAAAATCGAGCCTAATAGCTGCCATCGCGACGGAGTCATTTGCCGAGTCCGTTCCGCTGGTTATTCCGCCCACTCTCTTGTCTCCTGATTTGTACCCCGACAACGTTCCTCTAACCGTCGTTGACACACCTTCTAGCTTGGACAAACAAAGCAAGCGTAACGAGGAGTTGAAAAGAGCTGATGTTGTGGTTTTAACCTATGCTTGCAATGACACGATGTCGTTTTCTCGGTTGAGTTCTTACTGGTTACCGGAACTGCAGAAGTTGGAGGTGAAGGCGCCTGTAGTCGTGGTTGGTTGCAAGCTGGATCTTAGGGATGAAAGCCAGCAAGTGAGCTTGGAGCGCCTCATGACACAGCTCCTGCAACAGTTCAAGGAAATCGTCACCTGCATTGAATGCTCTGCTGCTACGCAATACCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAAGCGGTACTGCATCCAGTAGATCCATTGTATGATATTGGAAGTCAAGCTTTAACAGATCGATGTGTTAGGGCACTGAGAAGAATATTTGTTCTATGTGATCGAGACATGGACGAAGCCCTCAATGAAGCAGAACTAAATGAGTTTCAGGTTAGATGTTTCAATGCATCATTGCAATCATCTGAAATAGCTGGAGTCAAATCAGTTGTACAGCAGAAAGTACCTGAAGGAGTCAACTCACTTGGTCTTACTTTTCCAGGATTTATTTTTATTCATAATATGTTCCTCAAAAAAGGGCGTCCAGAGACATTATGGGCTGTTCTAAGAAACTTTGGATATGATAATAATTTGAAACTCAAGGATGATTTCCTTCCTGTTCCTTCTAAGCGTGCTTTGGATCAGAGTGTGGAGCTGACAGGTGAAGCTGTAGAGTTTCTAAATGGTATCTTTCGGCTGTTAGATACAGATAAAGATCGAGCCCTACGGCCTACTGAAGTTGATAAGTTATTTGGTACTGCTCCAGAAAGTCCATGGAATGATGCTCTGTATGAGGATGCTGCTGAGGTAACTGACATGGGTTACCTATCTCTTAATGGATTCTTGTCACAGTGGGCCCTAATGACATTACTTGATCCACCATGTAGCCTGGCTAATTTAATTTACGTTGGATATAGTGGTAATCCTGCGGCAGCTCTCCGTGTTACTCGTAGAAGAGCAGTAGATCGCAAGAAGCAAGCAACAGAAAGGAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAATGCCGGGAAGTCTGCTCTGTTGGATTCTTTGGTGGGAAG 1337 0.4488 MANHSSFSGRSGVRVVVTGDRATGKSSLIAAIATESFAESVPLVIPPTLLSPDLYPDNVPLTVVDTPSSLDKQSKRNEELKRADVVVLTYACNDTMSFSRLSSYWLPELQKLEVKAPVVVVGCKLDLRDESQQVSLERLMTQLLQQFKEIVTCIECSAATQYQVPEVFYFAQKAVLHPVDPLYDIGSQALTDRCVRALRRIFVLCDRDMDEALNEAELNEFQVRCFNASLQSSEIAGVKSVVQQKVPEGVNSLGLTFPGFIFIHNMFLKKGRPETLWAVLRNFGYDNNLKLKDDFLPVPSKRALDQSVELTGEAVEFLNGIFRLLDTDKDRALRPTEVDKLFGTAPESPWNDALYEDAAEVTDMGYLSLNGFLSQWALMTLLDPPCSLANLIYVGYSGNPAAALRVTRRRAVDRKKQATERNVFQCYVFGSKNAGKSALLDSLVG 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03211 445 Pfam EF hand associated 350 417 IPR013566 -
Spst1g03211 445 Gene3D - 185 289 - -
Spst1g03211 445 Pfam EF hand associated 229 312 IPR013567 -
Spst1g03211 445 SMART ras_sub_4 14 178 - -
Spst1g03211 445 Pfam Ras family 14 175 IPR001806 GO:0003924|GO:0005525
Spst1g03211 445 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
Spst1g03211 445 FunFam Mitochondrial Rho GTPase 185 289 - -
Spst1g03211 445 Gene3D - 10 180 IPR027417 -
Spst1g03211 445 SMART rab_sub_5 13 178 - -
Spst1g03211 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 209 IPR027417 -
Spst1g03211 445 PRINTS Transforming protein P21 ras signature 153 175 - -
Spst1g03211 445 PRINTS Transforming protein P21 ras signature 13 34 - -
Spst1g03211 445 PRINTS Transforming protein P21 ras signature 114 127 - -
Spst1g03211 445 SUPERFAMILY EF-hand 182 380 IPR011992 -
Spst1g03211 445 PANTHER RHO FAMILY GTPASE 13 178 IPR003578 GO:0005525|GO:0007264
Spst1g03211 445 Gene3D - 291 445 - -
Spst1g03211 445 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Spst1g03211 445 FunFam Mitochondrial Rho GTPase 10 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03211 Spst-Chr1 40643198 40649993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03211 1 445 EF-hand Containing Proteins AT3G63150 59.101 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03211 K07870 - gmx:100803790 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03211 1 40643198 40649993 Spst7g01223 7 39829613 39831501 PCT