LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g03184	ATGGATTCGGAACCCAAGAAGGACGTCGAAGTCGCTCCGGCCCTCATCGCCGTTCATCCCGACCAATGCTCCGTCGCCGTTGCCGTCGGGCAGCACCTCCGCGTCTTCGACCTCGCTGCCGGTGACGCAGCTTCCTTAACGGACGACTCCGACGCCGTTGCCTTCCACACTGATAACATCAGAGCCATTTGCTTCGGCGCCAAAGGAAAACTATTTGTATCCGCCGGTGACGATAAAACCGTCAAGGTCTGGTCAACACAGTCATGGCGTTGCATCACCACCGTGTCCTCTGAGAAGAGAGTATCAGCAGTTGCAATTAGCAACGATGGAAACTTCGTTTGCTTCGCCGACAAATTCGGCCTTGTTTGGATTGTGGATCTCGACCCTCCGTCACGCGATAAGAAACCCTCACCTCTTCTTTCTCACTATTGCAGCATCATCACTAGCTTGGAATTTTCCCCGGATGGTCGCTTTATTTTAAGTGCTGATCGTGATTTCAAAATTCGTGTTACTAATCTTCCCAACAAGCCCTTAAATGGAGCTCACCAGATACAAAGTTTCTGTCTCGGTCATTCAGAGTTTGTTTCCTGCCTGGCATTTGTTCAGGGTCAGGAATGCCCTGAAGGCCTTCTTCTGTCTGGCAGTGGTGATTCTACAGTTCGATTGTGGAATGTCGACTCTGGAGCACTTTTTGATACTTGTGAGGTTGCTCTTAAGGCAGGACTTTTAGAGGATAATGGCAAAGCAGAGGAGCATGGTCATGCTGTTACTGATATATGCACCGTCCTTGATGGTTTGCTTGTTGCAGTGGCCATTCAGAGCTTGCAAGGAATAATATTGCTGAGTTGCAATGTTTCTGAAAAAACTCTTTCTGTTACCAAGGTGGTTTCAGTTGTTGGAGAGGCCTTTGTCCCTACCTGCTTGGGGAGCAGCCCCTCTACAGGAAAATTGTGGATGGTTACTGGTGTCTCAAGTTTACCTGGTTGTAGCTATCCTGCGTTGGCTCGTGTTAGAGTAATATCTGATATAGATATTGAGCAAGAACCAGTTGTTCTGGGAGATGATAACATACCTGGGGGAGAAAAGCTGCTAGAAACGTTGCAAGGAACTGCCTCTGTTGATGACAATGCTTTTTTAGCAGCAGCTGAAGCTGTCAAAACAGCTATGTGCCACCTATTGATAAAAAAACAATACCCTTCTGAGAATAGAGAATCTAGGAAGAAATGCAGAAATGATAGAAAACTCAAGGGCTAG	1254	0.4737	MDSEPKKDVEVAPALIAVHPDQCSVAVAVGQHLRVFDLAAGDAASLTDDSDAVAFHTDNIRAICFGAKGKLFVSAGDDKTVKVWSTQSWRCITTVSSEKRVSAVAISNDGNFVCFADKFGLVWIVDLDPPSRDKKPSPLLSHYCSIITSLEFSPDGRFILSADRDFKIRVTNLPNKPLNGAHQIQSFCLGHSEFVSCLAFVQGQECPEGLLLSGSGDSTVRLWNVDSGALFDTCEVALKAGLLEDNGKAEEHGHAVTDICTVLDGLLVAVAIQSLQGIILLSCNVSEKTLSVTKVVSVVGEAFVPTCLGSSPSTGKLWMVTGVSSLPGCSYPALARVRVISDIDIEQEPVVLGDDNIPGGEKLLETLQGTASVDDNAFLAAAEAVKTAMCHLLIKKQYPSENRESRKKCRNDRKLKG	417

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g03184	417	ProSiteProfiles	Trp-Asp (WD) repeats profile.	188	233	IPR001680	GO:0005515
	Spst1g03184	417	Hamap	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4].	22	409	IPR028884	GO:0036265
	Spst1g03184	417	Gene3D	-	99	325	IPR015943	GO:0005515
	Spst1g03184	417	ProSitePatterns	Trp-Asp (WD) repeats signature.	211	225	IPR019775	-
	Spst1g03184	417	ProSiteProfiles	Trp-Asp (WD) repeats profile.	53	94	IPR001680	GO:0005515
	Spst1g03184	417	FunFam	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit	12	98	-	-
	Spst1g03184	417	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	53	88	-	-
	Spst1g03184	417	FunFam	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit	99	351	-	-
	Spst1g03184	417	Gene3D	-	14	98	IPR015943	GO:0005515
	Spst1g03184	417	PANTHER	WD40 REPEAT PROTEIN 4	12	408	IPR028884	GO:0036265
	Spst1g03184	417	Pfam	WD domain, G-beta repeat	56	85	IPR001680	GO:0005515
	Spst1g03184	417	Pfam	WD domain, G-beta repeat	188	224	IPR001680	GO:0005515
	Spst1g03184	417	Pfam	WD domain, G-beta repeat	141	170	IPR001680	GO:0005515
	Spst1g03184	417	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	188	228	-	-
	Spst1g03184	417	SUPERFAMILY	WD40 repeat-like	16	270	IPR036322	GO:0005515
	Spst1g03184	417	SMART	WD40_4	180	224	IPR001680	GO:0005515
	Spst1g03184	417	SMART	WD40_4	47	85	IPR001680	GO:0005515
	Spst1g03184	417	SMART	WD40_4	88	126	IPR001680	GO:0005515
	Spst1g03184	417	SMART	WD40_4	133	172	IPR001680	GO:0005515

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g03184	56	231	Miscellaneous Gene Families	AT5G08390	24.457	1.11e-06	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g03184	K15443		-	gmx:100786310	717.998

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst1g03184	1	40309377	40312107	Spst1g03184	1	40309377	40312107	ECH