Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03183 ATGATGTCTGGACTGATTGAAGGACTTCCTGATGCTGTTGCAATTAGGTGCCTTGCACGGGTTCCTTTCTACCTTCACCCCATGTTAGAGTTTGTCTCACGTTCATGGCAAGCAGCTATTCGTAGCTCTGAACTATTTAAAGCTCGGCAGGAGGTTGGTTCTACAGAGGATCTGTTATGTGTCTGTTCCTTTGATCCAGAGAACTTATGGCAGCTGTATGACCCTATGCGAGATCTCTGGATTACACTTCCTGTTCTTCCGTCAAAGATCAGGCACCTGTCCCACTTTGGTGCTGTTTCCACTGCTGGAAAGTTGTTTGTGATTGGTGGTGGAAGTGATGCTGTTGATCCTTTGACTGGGGACCAAGATGGTTGTTTTGCAACAGATGAAGTCTGGTCATATGACCCTGTAGTCCGGCAGTGGGCCCCTCGTGCGTCAATGCTTGTCCCCCGTTCTATGTTTGCCTGCTGTGTTTTGGATGGGAAAATTGTTGTTGCTGGGGGCTTCACTAGCTGCAGAAAATCAATATCTCAAGCAGAAATGTATGATCCTGAGAAGGATGTTTGGATTCCAATGCCTGATCTTCATCGCACTCATAATTCGGCCTGTTCAGGAGTAGTGATCGGTGGAAAGGTGCATGTACTGCACAAGGATATGTCAACAGTGCAAGTTTTAGACAATGCAGGGCCAGGGTGGATAGTTGAGGAATGTGCATGGCTCCAAGGTCCGATGGCAGTTGTCCGTGATGCACTTTATGTGATGAGCCATGGATTAATCTTCAAGCAGGACAAAGAAGTGAGAAAGGTTGTAGGTTCAGCATCTGAGTTTCGAAAGAGAATTGGATTTGCAATGGCTGGACTAGGTGATGAGTTATACGTCATTGGAGGCTTCATTGGCCCTGACAGATGGAATTGGGACATTAAGCCATTATCCGAAGTTGATGTTCTCACACTTGGAAGTGAGAGACCAACTTGGCGCCAAGCAGCTCCAATGACTCGGTGTCATGGTACTATTCTTGGTTGTACGCTGCTGAGAATTTAG 1041 0.4678 MMSGLIEGLPDAVAIRCLARVPFYLHPMLEFVSRSWQAAIRSSELFKARQEVGSTEDLLCVCSFDPENLWQLYDPMRDLWITLPVLPSKIRHLSHFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFATDEVWSYDPVVRQWAPRASMLVPRSMFACCVLDGKIVVAGGFTSCRKSISQAEMYDPEKDVWIPMPDLHRTHNSACSGVVIGGKVHVLHKDMSTVQVLDNAGPGWIVEECAWLQGPMAVVRDALYVMSHGLIFKQDKEVRKVVGSASEFRKRIGFAMAGLGDELYVIGGFIGPDRWNWDIKPLSEVDVLTLGSERPTWRQAAPMTRCHGTILGCTLLRI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03183 346 Gene3D - 61 343 IPR015915 GO:0005515
Spst1g03183 346 CDD F-box_AtAFR-like 5 49 - -
Spst1g03183 346 Pfam Kelch motif 93 147 IPR006652 GO:0005515
Spst1g03183 346 Pfam Kelch motif 279 331 IPR006652 GO:0005515
Spst1g03183 346 Pfam Kelch motif 150 195 IPR006652 GO:0005515
Spst1g03183 346 PANTHER OS02G0202900 PROTEIN 4 295 IPR045887 -
Spst1g03183 346 SMART kelc_smart 290 345 IPR006652 GO:0005515
Spst1g03183 346 SMART kelc_smart 162 209 IPR006652 GO:0005515
Spst1g03183 346 SMART kelc_smart 104 161 IPR006652 GO:0005515
Spst1g03183 346 SUPERFAMILY Kelch motif 61 333 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03183 Spst-Chr1 40306794 40307834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03183 9 189 Miscellaneous Gene Families AT4G33900 30.000 2.13e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03183 - - gmx:100800954 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03183 1 40306794 40307834 Spst1g03183 1 40306794 40307834 ECH