Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03180 ATGCTTGCAATAAGAAAGCTCAAAACAGGACCTGATATCCCCTTGGTTTTAAGTGTCATTGTTGCTAATTGCAATTATAGAACAGGCCAAGTTTCTAGTGACAAAAGTGTCCAGTATATTGTTAAGTCTGCTATCTCTTCGTTAGCTAAGTCAAGTTCATCAGCATTTCTTCGGGGACCAGAGAATAAATTTACTCTTCAAGGACTATGTTTCTCTAGTGTGGCTGAAAGAATCCTGGTCCAGGCTCAAGACCCAGCCAAAGTTAGTTTGGAGATACAAAATGCTATTGATTCGAATCAATTAGATTGTTCGTGGAAATTATTGGAGCAGCATATGCATATGGAGGGGTTTCCCAGAAAATCTGTCATCAGCAAGCTTGTAACAAGTTATGTGGATAGCCTTGATACAAAACTGCTGGGAAAAGCTTATGAATTAGTAGAACGTGCTATTGAGGAAGGTAAACAGGATTTGTTAGAAAAGGATGTGCTTATCTACCTTACCTTTGGCCTTGCAAAAGCCAGACTACCAGTTCCAGCATCAACCATTTTAAGAAAAATGATAGATATGGAGCATTTTCCCCCAGCCACTGCTTGGTCTGCAGTTTTAGCACACATGTCGCAAACAGCAGAAGGAAGTTATCTTGCTTCTGAGTTGATTCTTGAAATAGGTTATTTGTTCCAGAACAATAGAGTAGATCCGCGTAAAAAGAGCAATGCACCTTTGATAGCCATGAAACCAAACACTACTGCTTTTAGCATTGCTTTGGCACGGTGCCTCCTTTTCGAGTCATCTAGGAAGGCGGAACAACTTCTTGATATGATGCCTCGAATTGGTGTCAAAGCAGATGCACACTTACTGATAATAATGGCTCGTGTATTCGAGAGAAATGGGAGAAGGGAAGAGCTCAAGAAGCTGCAAAGGCACATAGAGGAAGCCCCAAATCTAACTGATTTACAGTTCCGACAGTTCTATAATTGTTTGTTGACATGCCATTTGAAATTTGGCGATCTAGAATCTGCATCAAATATGGTTTTGGAAATGCTTAGGAAAGCAAAGGAAGCAAGAAATTCTCTTTCAGCTGCCAAATTTATGATAAATGCTGATGGCATTGATCATAACCATTCTCCTGGACTGGCTTCTGTGCAAAGTTTGAATAACAATAAGGATTTAGATAGTTTACAATATAACAGGTCATGTACAAGTGCTGTACTATCTTATGAGGAGTTCTCTAAAGATAGAAACTTCTCAAAGCTAGAAGCAGAGTCAAAGGCTATACTTGGTTCTTTATTAGCTAAGTTGCAGATGCAGGTGGACTTGATTACAACCAAGCATGGGATATTGCAGCCAACTGAAACAATTTATGTAAAATTAGTTAAAGCTTTACTAGAAGCTGGCAAGACCAAGGATTTAGTTGCGTTTCTCCTCAAGGCAGAAAGAGAAGATTCTCCATTTTCCAATGACAATTCAGTTTTGGTTCATGTTATGAACACATGCATCTCACTTGGATGGCTGGATCAAGCACACGATCTCCTGGATGAGATGCGTCTGGCCGGAGTTAGAACTGGTTCATCTGTATACTCCTCTCTTTTGAAAGCATATTGCCGAGCGAATAGGGCTGCAGATGTCACATCGCTTCTGAGAGATGCTAGGATAGCTGGTATCCAGCTTGACTCAAGTTCATATGAGGCAATGATCCAATCCAGGGTGCTCCAGCAAGACACAAAGGGTGCACTCCAACTATTTAAAGAAAGGAAAGAGGCTAGAATTCCAAGAGTCACTCAACGAAACTTTGACATGATGGATAATGATGGAGCAGAGACTGATGAAGCTGGACTGATGACCAAGCTTTTGCAGGAAATCAAGGAAGGGCAGAGAGTGGATTGTGGAGTACATGACTGGAATAATGTAATCCACTTCTTTTGCAAGAAGAGACTGATGCAAGATGCAGAAAAGGCTCTAAAGAAGATGAGAAGCTTAGGCCACTCGCCAAATGCGCAAACTTTCCATTCTATGGTCACAGGGTATGCTGCCACTGGAGGGAAATATCAAGAGGTGACAGAGCTATGGGGAGAGATGAAAGCTTCTTCTATCTCCATGACGTTTGATCAGGAACTTCTTGATTCTGTGTTGTATACGTTTGTAAGGGGTGGATTCTTTGTTCGAGCCATTGAAGTTGTGTCCGTGATGGAAAAAGGAAACATGTTTGTTGACAAGTACAAGTACCGAATGCTATTCTTGAAATACCATAAATCACTTTACAAAGGGAAGGCTCCGAAATTTCAGACAGAATCCCAACTAAACAAAAGGGAAGCAGGCCTGGCTTTTAAAAGGTGGATAGGCTTGACTTAA 2349 0.41 MLAIRKLKTGPDIPLVLSVIVANCNYRTGQVSSDKSVQYIVKSAISSLAKSSSSAFLRGPENKFTLQGLCFSSVAERILVQAQDPAKVSLEIQNAIDSNQLDCSWKLLEQHMHMEGFPRKSVISKLVTSYVDSLDTKLLGKAYELVERAIEEGKQDLLEKDVLIYLTFGLAKARLPVPASTILRKMIDMEHFPPATAWSAVLAHMSQTAEGSYLASELILEIGYLFQNNRVDPRKKSNAPLIAMKPNTTAFSIALARCLLFESSRKAEQLLDMMPRIGVKADAHLLIIMARVFERNGRREELKKLQRHIEEAPNLTDLQFRQFYNCLLTCHLKFGDLESASNMVLEMLRKAKEARNSLSAAKFMINADGIDHNHSPGLASVQSLNNNKDLDSLQYNRSCTSAVLSYEEFSKDRNFSKLEAESKAILGSLLAKLQMQVDLITTKHGILQPTETIYVKLVKALLEAGKTKDLVAFLLKAEREDSPFSNDNSVLVHVMNTCISLGWLDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCRANRAADVTSLLRDARIAGIQLDSSSYEAMIQSRVLQQDTKGALQLFKERKEARIPRVTQRNFDMMDNDGAETDEAGLMTKLLQEIKEGQRVDCGVHDWNNVIHFFCKKRLMQDAEKALKKMRSLGHSPNAQTFHSMVTGYAATGGKYQEVTELWGEMKASSISMTFDQELLDSVLYTFVRGGFFVRAIEVVSVMEKGNMFVDKYKYRMLFLKYHKSLYKGKAPKFQTESQLNKREAGLAFKRWIGLT 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03180 782 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Spst1g03180 782 Pfam PPR repeat 324 350 IPR002885 -
Spst1g03180 782 Pfam PPR repeat 494 519 IPR002885 -
Spst1g03180 782 PANTHER BNAC05G43320D PROTEIN 22 781 - -
Spst1g03180 782 Gene3D Tetratricopeptide repeat domain 594 778 IPR011990 GO:0005515
Spst1g03180 782 Gene3D Tetratricopeptide repeat domain 169 386 IPR011990 GO:0005515
Spst1g03180 782 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 664 699 IPR002885 -
Spst1g03180 782 Coils Coil 337 357 - -
Spst1g03180 782 Gene3D Tetratricopeptide repeat domain 387 589 IPR011990 GO:0005515
Spst1g03180 782 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Spst1g03180 782 NCBIfam pentatricopeptide repeat 633 665 IPR002885 -
Spst1g03180 782 Pfam Pentatricopeptide repeat domain 544 589 IPR002885 -
Spst1g03180 782 Pfam PPR repeat family 631 676 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03180 Spst-Chr1 40270113 40272461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03180 449 683 Miscellaneous Gene Families AT4G11690 25.000 2.37e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03180 - - gmx:102661989 1334.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03180 1 40270113 40272461 Spst1g03180 1 40270113 40272461 ECH