Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03177 ATGTCGTCTTTAGTAGCAGATTTGCTCCGTCATTGCGGCGGAACCGCCGTCATCGACGGCGGACTTGCGACGGAGCTGGAGCGCCATGGCGCGGACCTGAACGATCCCTTATGGAGCGCCAAATGCCTCTTTTCCTCTCCTCATCTTATTCGCCAAGTGCACCTTGATTATCTGGAAAATGGCGCTGACATTATAACCACAGCATCTTATCAAGCCACAATTCAAGGTTTTAAAGCCAAAGGCTATACGGATGAAGAAGGTGAAGCCATGCTCAGAAGGAGTGTTGAAATTGCTCGCGAGGCGCGTGAGTTGTACTATAAAGGATGTGAATGCTGTTCGGGTGATGGCGCTGATGGTAGAATCCTCAAACAGCGGCCTATCCTCATTGCTGCGTCAGTGGGGAGCTATGGAGCTTATTTAGCCGACGGATCAGAGTACAGTGGGGATTATGGTGATGCAATCACGATAGAAACTCTAAAAGATTTTCATCGGAGAAGAGTTCAAATTTTAGCAGATTCAGGTGCTGACCTGCTTGCATTTGAAACAGTGCCCAATAAACTTGAAGCCGAGGCTTATGCTCAGCTTCTGGAAGAAGAGGACATAAAAATTCCAGCATGGTTTGCTTTTAACTCTAAGGATGGAGTGAACGTTGTTAGCGGTGATTCTTTAATGGACTGTGGCTCTATTGCTGAATCATGCAATAAAGTTGTTGCTGTCGGAATTAACTGTACCCCGCCTAGATTTATACATGATCTGATTGTTTTGCTTAAGAAGGTGACTACAAAACCGATTGTAATATATCCAAACAGTGGGGAAACCTATGATGCTGAAGTAAAGCAGTGGGTGCAAAATACTGGTGTAACAGATGAAGATTTTGTCTCATATGTTACTAAATGGCGTGAGCTAGGGGCTTCCCTTGTAGGTGGCTGTTGCAGAACGACTCCAGCTACTATAAGGAAGATATACAGGGTACTCTCTAGCAGTGAATCTGCCATTCATGGCAAAGAGTGA 1011 0.455 MSSLVADLLRHCGGTAVIDGGLATELERHGADLNDPLWSAKCLFSSPHLIRQVHLDYLENGADIITTASYQATIQGFKAKGYTDEEGEAMLRRSVEIAREARELYYKGCECCSGDGADGRILKQRPILIAASVGSYGAYLADGSEYSGDYGDAITIETLKDFHRRRVQILADSGADLLAFETVPNKLEAEAYAQLLEEEDIKIPAWFAFNSKDGVNVVSGDSLMDCGSIAESCNKVVAVGINCTPPRFIHDLIVLLKKVTTKPIVIYPNSGETYDAEVKQWVQNTGVTDEDFVSYVTKWRELGASLVGGCCRTTPATIRKIYRVLSSSESAIHGKE 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03177 336 FunFam Homocysteine S-methyltransferase 5 324 - -
Spst1g03177 336 PIRSF BHMT 271 333 IPR017226 GO:0008168|GO:0008270|GO:0009086
Spst1g03177 336 PIRSF BHMT 7 105 IPR017226 GO:0008168|GO:0008270|GO:0009086
Spst1g03177 336 Pfam Homocysteine S-methyltransferase 17 323 IPR003726 -
Spst1g03177 336 PANTHER ZGC:172121 8 329 - -
Spst1g03177 336 Gene3D - 8 323 IPR036589 -
Spst1g03177 336 SUPERFAMILY Homocysteine S-methyltransferase 13 327 IPR036589 -
Spst1g03177 336 ProSiteProfiles Homocysteine-binding domain profile. 4 325 IPR003726 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03177 Spst-Chr1 40248060 40252756 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03177 K00547 - gmx:100790567 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03177 1 40248060 40252756 Spst1g03177 1 40248060 40252756 ECH