Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03128 ATGGCCGAGCATGGTTTTGATGGACATGATGAAGGATATGTGCCCGAGGACCCTAGTTTTCCCCAAAATCATTCTGATGAACACGATGTAGGGACTGTGATTGATAGCTCTGGATTTCCTCATCTGCTGCCTGATGAACATGATGCAGTCAATTTGGTCGAGGATGCCAATTTTCCTGAAAATCATTTTGTTGAACACGAACATGATCATGAACATGATGTTGGAGGTTTGCCTGGGGACACGGATTCTCCACAGCAGGAGCATGTTGAGGAAGACCATGGTGCTGTGTATGTCACTGAGAATTTTGATTCGTCGCCGGTACAGGGATCCGACGATGTTTTGAAAGGAAATGAAATAAAAAAGTGGCCGGGGTGGCCAGGAGAGAATGTCTTCAGGATGTTGGTTCCAGTGCAAAAGGTTGGCAGTATTATCGGACGAAAGGGTGAGTTTATAAAGAAAATTACAGAAGAGACTAAGGCGCGAATTAAAATTCTTGATGGTCCACCTGGAATCTCAGAAAGAGCAGTAATGGTTTCTGCCAAAGAAGAGCCGGATCGGCCCATACCACCTGCTGTTGATGGTTTGCTAAGGGTTCATAAGCAAGTTATCAATGTTGATCGTGACCTTGCAGATAGTGCATTGGCTGCTGGACGATCAGTAGTTACTAGGCTTCTAGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGATCAACTATAAAATCCATTCAAGATGGTTCTGGTTGCACCATACGTGTTCTGGGATCAGAACACCTGCCAGTATTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAGGGGATTCTACTGGTGTTCACAAGGCAGTTGAACTTATTGCAGTTCATTTACGCAAGTTCTTGGTTGACCGCAGCATAGTTGGAGTTTTTGAAACACAGATGCAAACGTCAGATGTTAGAGCTAACCAGAATGGGCCGCCACATCAAAGTTGGGTTCCTCCTCAAGGGTTTCCTGCTCCTGCTGGAAGTGGTGGTGGAGGACCTGCTTTTGCACCCAATCATCAATATATGCCACCTACACATCACTATGATAGTTATTACCCACCCACTGAGTTGCCTCCCATGGATAAGAATCTTCATCAAGGTCCACCCCCTGCCTATGCAAGGGATGCTTCTATGGGAATTCATTCATCAAGTGTACAACCACATCAATCTCTTGTAACTAAGGTCACGCAGCACATGCAAATTCCTCTTTCATATGCAGATGCTGTTATAGGAGCATCAGGAACTAATATCAGCTATATTCGTCGTGCTAGTGGGGCAAGTATTACAATTCAGGAAACCAGGGGTGTGCCAGGGGAGATGACTGTCGAGATGAGTGGGACTTCTTCTCAAATACAGGCAGCCCAACAGCTGGTTCAGAATTTCATGGCTGAAGCTGCAAATGCGACGCAGGATCCAATGGGGGGTTCAGGTAGCCAAGGTTACAGTACCTATCCAACTAATGCTCCGGTTTATGCATCTCCACCCTCCAGCACTGGAGCTCATACAGGCCACGTGCCTTCAGCAGATTATGGGCCCGTTTATGGCACCAATTATGGGTATTAA 1593 0.4608 MAEHGFDGHDEGYVPEDPSFPQNHSDEHDVGTVIDSSGFPHLLPDEHDAVNLVEDANFPENHFVEHEHDHEHDVGGLPGDTDSPQQEHVEEDHGAVYVTENFDSSPVQGSDDVLKGNEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDRPIPPAVDGLLRVHKQVINVDRDLADSALAAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDGSGCTIRVLGSEHLPVFALRDDSIVEIQGDSTGVHKAVELIAVHLRKFLVDRSIVGVFETQMQTSDVRANQNGPPHQSWVPPQGFPAPAGSGGGGPAFAPNHQYMPPTHHYDSYYPPTELPPMDKNLHQGPPPAYARDASMGIHSSSVQPHQSLVTKVTQHMQIPLSYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEMSGTSSQIQAAQQLVQNFMAEAANATQDPMGGSGSQGYSTYPTNAPVYASPPSSTGAHTGHVPSADYGPVYGTNYGY 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03128 530 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 216 301 IPR036612 GO:0003723
Spst1g03128 530 CDD KH-I_PEPPER_rpt2_like 221 293 - -
Spst1g03128 530 ProSiteProfiles Type-1 KH domain profile. 128 195 - -
Spst1g03128 530 Pfam KH domain 222 288 IPR004088 GO:0003723
Spst1g03128 530 Pfam KH domain 406 469 IPR004088 GO:0003723
Spst1g03128 530 Pfam KH domain 131 183 IPR004088 GO:0003723
Spst1g03128 530 CDD KH-I_PEPPER_like_rpt3 404 472 - -
Spst1g03128 530 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 394 475 IPR036612 GO:0003723
Spst1g03128 530 ProSiteProfiles Type-1 KH domain profile. 219 288 - -
Spst1g03128 530 Coils Coil 461 481 - -
Spst1g03128 530 ProSiteProfiles Type-1 KH domain profile. 404 468 - -
Spst1g03128 530 SMART kh_6 218 293 IPR004087 GO:0003676
Spst1g03128 530 SMART kh_6 127 200 IPR004087 GO:0003676
Spst1g03128 530 SMART kh_6 403 473 IPR004087 GO:0003676
Spst1g03128 530 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 120 182 IPR036612 GO:0003723
Spst1g03128 530 MobiDBLite consensus disorder prediction 68 89 - -
Spst1g03128 530 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 120 490 - -
Spst1g03128 530 CDD KH-I_PEPPER_rpt1_like 128 196 - -
Spst1g03128 530 Gene3D - 128 297 - -
Spst1g03128 530 MobiDBLite consensus disorder prediction 1 28 - -
Spst1g03128 530 Gene3D K Homology domain, type 1 392 480 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03128 Spst-Chr1 39857341 39861209 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03128 K21444 - gmx:100799901 924.85