Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03117 ATGTCGAACCCTCAAAATCAGAAACCATGGAAGGCGGAATACGCGAAGTCGGGGCGATCGTCATGCAGGACGTGCAAGAGCCCCATTGCCAGCGAAACGCTGCGTCTCGGCAAGATGGTCCAATCCTCCAAGTTCGATGGCTTCATGCCGATGTGGAATCATGCTGCTTGCATCTTGAAGAAAGCTAATCAGATAAAATTAGTTGAAGATGTTGAAAACTTGGAGTCGCTTCGTTGGGAAGACCAGCAGAATATCAGAAAATACATAGAGAGTGGCAGTGGGAGTGGCGGCAGCAGTAGCAGTGCCACAAAGTCAGGCTCAAAAGCTGTCAAAGATACTGAATGTGGTATTGAAGTTTCACAAACTTCTCGTGCTACTTGCAGGGATTGCAGTCAAAAAATTATCAAAGGAGAGGTGGGTTTTATTGTTGCTCTCATGTACCAGAGCCTCTATGGCCAAGTGGTCTCTAGATGGGCCATGGTGGGAGGTGCTAATTGGGGGCCTAAGTCCCTCCTAAATTCTGGCCACCGCAATCGTGTTCGTATATCTACAAAGCCTGATGGTCAAGGTGCTAAAGGTTTGGCTTGGCACCATGCCAAGTGTCTCCTGGAATTATTGCCATCAATTCAAGTGGATAAGTTATCAGGATGGAATAGTCTCTCATCTTCTGATCAATCAGCTGTCAGTGACTTTGCTAAGATGTGTCATCCCATGAACAAGGGGGGTGGTAGTGGTACAACCATTCAGACTGAAAAGGGTGAAGAATCCACAAAACAGCACACTTCCAAAGGTGGTATAAAGCGGGGGAAAGATGTTGATAGTGAGCGCAAATCAAAAGTTGCTAAGGCCAAGGGAGACGTGTCTGCAAGCAGTGCAGTGTCAGTGAAGGATTATAGTGAATCAGGGGAAGCATGTGATCTAGAGAAGAAGATGGAGACCCAGAGCAAAGAACTCTGGGCTCTGAAGGATGATCTCAAAAATCATGTGACAACAACTGAGTTGCGTGTAATGCTGGAAGCTAATGATCAAGATTCAACAGGATCAGAACTTGATTTACGTGACCGTTGTGCTGATGCAATGATGTTTGGAGCACTTGGTCTTTGCCCAATATGTTCCAGCTTTCTGCGTTACACTGGAGGAATGTACCGTTGCACTGGATATGTTTCTGAGTGGAGTAAATGTTCTTACTCTACCTGCGAACCAAGACGAATTGAAGCGAAGTGGAAAATCCCAGGAGAAACAAATAATCAGTACCTTAAAAAGTGGTTCAAGTCTCAAAAAGGGAAGAAACCAGTTAGGATATTGCCTCTTCAATCACCAAGGAAATCTGCTGAAAGTGAAATTACTGCTACTCAACATCAATCATCGAACAGTGAAAATTTTCAAGATATGAAAGTTGCTATCTGTGGATTAGCTAATGACTCTATTGAAGAATGGAAACACAAGATTGATGGCATAGGTGGAATGTTTCATGCAAAAGTAAAGAAAGATACTAACTGCTTGGTGGTTGGTGGAGCACTCAAAGATGAAGCTGAGATGCGGAAGGCAAGGAGGATGAAAATACCAATAGTCAGAGAGGACTACTTGATTGACTGCATACAAAGAAAGAAGAGACTTCCATTTGATATGTACAAGGTTGAAATGATTGGTGAGGCTTCTAGCATGGTCACCATTAAAGTGAAGGGGCAAAGTGCTGTTCATGAGGCTTCTGGCCTGCAGGATTCCTGCCACATACTTGAGGAAGGAAAAAGCATATATAACACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGCTACTACATTCTCCAGATAATTCAAGAAGATAAGGGTTCAGATTGCTATGTGTTTCGGAAATGGGGCCGAGTAGGAAATGACAAGATTGGAGGAAATAAACTTGATGAAATGCCAAAATCTGATGCAATCCGTGAATTCAAACGATTATTCTATGAGAAAACTGGAAACCCTTGGGAGGCGTGGGAACAAAAGACTATTCAGAAACAACCTGGGAGATTTTTCCCATTGGATATTGATTATGGAGTTAACAAGCAGGTCTCAAAAAAGAAAAGGAATGATAATGACAGCAAACTACCCCCTCCATTAATAGAATTGATTAAAATGTTATTCAATGTGGAAACATACAGAGCTGCCATGATGGAGTTTGAGATTAATATGTCTGAAATGCCACTTGGTAAACTGAGCAAAAGCAATATCCAAAAGGGTATGTTGATACATTACTCATTATCATTGTTTGATTTTATGTTGGTATGCTTCGGCTTCCCAGGGTTTGAAGTATTGTCAGAGATACAAAATCTGTTAAAAAATAGCAATCCTGATTCATCAGTAAAGGAAAGCTTACTTATTAATGCCAGCAACCGGTTCTTCACCATGATCCCTTCTATTCATCCACATATTATTAGGGATGAGGGTGATTTTAAGTCCAAGGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATAGCCTCAAGATTAGTTGGATTTAATGCCAACAATGAGGACTCAATTGATGATAATTATAAGAAGCTCCACTGTGATATGTCTCCACTTCCTCATGATAGTGAAGACTTTTGTTTAATTGAGAAGTTTCTTCATAATACTCATGCCCCTACACATACGGACTGGAGTCTAGAACTAGAAGAAGTGTTTTCACTAGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGGATGCTCCTATGGCATGGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCAGCGACTGGCTATATGTTTGGCAAAGGGGTGTACTTTGCTGACCTTGTCAGCAAAAGTGCCCAGTATTGCTTCACCGATAAGAAAAATCCTGTTGGTCTAATGATTTTGAGTGAAGTGGCACTTGGAAACATCTATGAGCTCAAGAAAGCCAAGTATATGGATAAACCTCCCGAAGGAAAGCACTCTACTAAAGGATTGGGCAAGAAAATGCCTCAAGAATCGGAATATGCAAAGTGGAGGGGCGATGTCACTGTTCCTTGTGGCAAACCAGTGCCATCAAATGTCAAGGCTTCTGAGCTCATGTACAATGAGTATATTGTTTATAATACTGCCCAAGTTAAGATGCAATTCTTGTTGAAGGTGAGTCCATCTGGGATTCCTAGACTTGTCTTGATAAGGTCTCATTTTGAGTTGGCTGGAGATCTTTCAACTTTTTTTTGGGGCATGTATCTGGACTGGGCAAATTCATAA 3291 0.4178 MSNPQNQKPWKAEYAKSGRSSCRTCKSPIASETLRLGKMVQSSKFDGFMPMWNHAACILKKANQIKLVEDVENLESLRWEDQQNIRKYIESGSGSGGSSSSATKSGSKAVKDTECGIEVSQTSRATCRDCSQKIIKGEVGFIVALMYQSLYGQVVSRWAMVGGANWGPKSLLNSGHRNRVRISTKPDGQGAKGLAWHHAKCLLELLPSIQVDKLSGWNSLSSSDQSAVSDFAKMCHPMNKGGGSGTTIQTEKGEESTKQHTSKGGIKRGKDVDSERKSKVAKAKGDVSASSAVSVKDYSESGEACDLEKKMETQSKELWALKDDLKNHVTTTELRVMLEANDQDSTGSELDLRDRCADAMMFGALGLCPICSSFLRYTGGMYRCTGYVSEWSKCSYSTCEPRRIEAKWKIPGETNNQYLKKWFKSQKGKKPVRILPLQSPRKSAESEITATQHQSSNSENFQDMKVAICGLANDSIEEWKHKIDGIGGMFHAKVKKDTNCLVVGGALKDEAEMRKARRMKIPIVREDYLIDCIQRKKRLPFDMYKVEMIGEASSMVTIKVKGQSAVHEASGLQDSCHILEEGKSIYNTTLNMSDLSTGINSYYILQIIQEDKGSDCYVFRKWGRVGNDKIGGNKLDEMPKSDAIREFKRLFYEKTGNPWEAWEQKTIQKQPGRFFPLDIDYGVNKQVSKKKRNDNDSKLPPPLIELIKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGMLIHYSLSLFDFMLVCFGFPGFEVLSEIQNLLKNSNPDSSVKESLLINASNRFFTMIPSIHPHIIRDEGDFKSKVKMLEALQDIEIASRLVGFNANNEDSIDDNYKKLHCDMSPLPHDSEDFCLIEKFLHNTHAPTHTDWSLELEEVFSLEREGEFDKFAPYRDKLGNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCFTDKKNPVGLMILSEVALGNIYELKKAKYMDKPPEGKHSTKGLGKKMPQESEYAKWRGDVTVPCGKPVPSNVKASELMYNEYIVYNTAQVKMQFLLKVSPSGIPRLVLIRSHFELAGDLSTFFWGMYLDWANS 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03117 1096 FunFam Poly [ADP-ribose] polymerase 291 363 - -
Spst1g03117 1096 FunFam Poly [ADP-ribose] polymerase 454 555 - -
Spst1g03117 1096 Pfam Poly(ADP-ribose) polymerase, regulatory domain 764 848 IPR004102 GO:0003950
Spst1g03117 1096 Pfam Poly(ADP-ribose) polymerase, regulatory domain 697 744 IPR004102 GO:0003950
Spst1g03117 1096 Pfam WGR domain 586 664 IPR008893 -
Spst1g03117 1096 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 697 852 IPR036616 GO:0003950
Spst1g03117 1096 SUPERFAMILY WGR domain-like 554 679 IPR036930 -
Spst1g03117 1096 ProSiteProfiles WGR domain profile. 575 674 IPR008893 -
Spst1g03117 1096 FunFam Poly [ADP-ribose] polymerase 4 106 - -
Spst1g03117 1096 Gene3D - 852 1064 - -
Spst1g03117 1096 FunFam Poly [ADP-ribose] polymerase 852 1064 - -
Spst1g03117 1096 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 298 437 IPR047572 GO:0008270
Spst1g03117 1096 Gene3D - 291 363 - -
Spst1g03117 1096 FunFam Poly [ADP-ribose] polymerase 364 425 - -
Spst1g03117 1096 Gene3D - 364 424 IPR038650 -
Spst1g03117 1096 SUPERFAMILY ADP-ribosylation 851 1062 - -
Spst1g03117 1096 ProSiteProfiles PARP alpha-helical domain profile. 696 835 IPR004102 GO:0003950
Spst1g03117 1096 Gene3D - 109 254 IPR036957 GO:0003677|GO:0008270
Spst1g03117 1096 Pfam PADR1 (NUC008) domain 354 403 IPR012982 GO:0008270
Spst1g03117 1096 ProSiteProfiles PARP catalytic domain profile. 842 1070 IPR012317 GO:0003950
Spst1g03117 1096 SMART WGR_cls 586 669 IPR008893 -
Spst1g03117 1096 Pfam BRCA1 C Terminus (BRCT) domain 457 533 IPR001357 -
Spst1g03117 1096 MobiDBLite consensus disorder prediction 253 283 - -
Spst1g03117 1096 PANTHER DNA LIGASE 114 1061 - -
Spst1g03117 1096 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 7 95 - -
Spst1g03117 1096 Gene3D - 686 851 IPR036616 GO:0003950
Spst1g03117 1096 SMART BRCT_7 458 536 IPR001357 -
Spst1g03117 1096 CDD WGR_PARP1_like 576 681 - -
Spst1g03117 1096 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 115 230 IPR001510 GO:0003677|GO:0008270
Spst1g03117 1096 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 10 93 IPR001510 GO:0003677|GO:0008270
Spst1g03117 1096 Gene3D BRCT domain 452 553 IPR036420 -
Spst1g03117 1096 SMART PADR1_2 352 405 IPR012982 GO:0008270
Spst1g03117 1096 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 13 89 IPR001510 GO:0003677|GO:0008270
Spst1g03117 1096 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 118 230 IPR001510 GO:0003677|GO:0008270
Spst1g03117 1096 SUPERFAMILY BRCT domain 457 546 IPR036420 -
Spst1g03117 1096 CDD parp_like 697 1062 - -
Spst1g03117 1096 Pfam Poly(ADP-ribose) polymerase catalytic domain 862 1062 IPR012317 GO:0003950
Spst1g03117 1096 Gene3D - 2 108 IPR036957 GO:0003677|GO:0008270
Spst1g03117 1096 SMART zf_PARP_3 118 233 IPR001510 GO:0003677|GO:0008270
Spst1g03117 1096 SMART zf_PARP_3 13 90 IPR001510 GO:0003677|GO:0008270
Spst1g03117 1096 MobiDBLite consensus disorder prediction 238 283 - -
Spst1g03117 1096 ProSiteProfiles BRCT domain profile. 456 546 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03117 Spst-Chr1 39731456 39742789 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03117 K24070 - gmx:100800968 1728.38