Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03054 ATGGCAGATAGTGAATCTGTTGTTACCGAAGCATCTGCACATTCTGCTGCTGAGACATATGCTTCGGCTGGCTATGCCGAGTCTGGGTCAAATCTTGCTCCCGAGGCAAGTGTTGCTGTTGATCAACCTGCTGGAGAAGGTGCTCAGTCCACTTCAGCCTATGGATTTGGTTATTCTAATTCTGGTGATGCGAATGCTTATACTGGGGATCCGAATTCTGTTCTACAACAAGCCCAGTTCAATGCAACTGGTGAATCCAAAGCACCTGGTGGAGTGCCTGATGCTAACGAGGCCTCTGCCGGGCTTGGAAGCACAGCTGATGAGCCTGCTATGGTTTCCGACTACAGTTCGTCTGTAAATGGTGGTGGTGTCAGTGCACTGGCAAATTCTGCTGGACATGTCAACGGGAATGCATTGGAAAACGTTGATGGGTCGGCTGATGAAAAACAGCTTGCAGATGGTTATGCAGCTGCTTTGTCTGCTGAGGAAGATCGACTATGGAATATTGTAAGAGCTAATTCATTAGAATTCACTGCCTGGACTTCCTTGATTGAAGAGACAGAGAAGGTAGCCGAGGACAATATTCTTAAGATTCGAAGAGTCTATGATGCCTTTCTAGCAGAATTTCCTTTGTGCTATGGTTATTGGAAGAAATATGCCGACCATGAGGCACGTGTTGGATCTGTAGATAAAGTTTTTGAAGTGTATGAGCGTGCTGTTCAAGGGGTTACGTATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAAGCACATATGGGGATCCAGACACTGTTCGTAGAATGCGTGCAACAGTGATATCTCCCTTGTATGGCGGAAAAGCTTTGATGGGATTACATGCCAGAATGCTTTTTGAACGGGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCTCTGTGGGATAAATACATTGAATATGAGTACATGCAGCAAGACTGGGCTCGCCTTGCCATAATTTATACCAGAATTTTAGAGAATCCAAATCAACAATTAGATCGGTATTTCGGCAGCTTCAAAGAGTTAGCTGGAAACAGACCTTTGTCAGAGTTACGAACTGCTGAAGAAGCTGCTGCAGTGGCAAGTGTTACTTCAGAGGCTTCTGGCCAAGTTATTGAGGGAGAGGTTCATCCTGATGGTGCAGAGCAGTCTCCTAAATCTGTAAGTGCTGGCTTAACAGAAGAAGAAGAGTTGGAGAAGTATATCGCCATTAGAGAAGAGATGTATAAAAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCTATCAGGAGGCCCTACTTTCATGTACGACCTCTCAATGTTGGAGAGCTTGAAAATTGGCACAATTATCTAGATTTTATAGAACGGGAAGGTGACTTGAGCAAGATTGTCAAGTTGTATGAGAGATGTGTCATTGCATGTGCCAATTATCCCGAATATTGGATTCGCTATGTTTTGTGTATGGAAGCCAGTGGAAGAATGGATCTTGCAAATAATGTTCTTGCCCGAGCCACCCAAGTCTTTGTTAAGAGACAACCGGAAATACATCTTTTTTGTGCCCGGTTCAAGGAGCAGAATGGAGATATCGATGGTGCTAGAGCTGCGTATCAACTTGTGCATAGTGAAACTTCTCCTGGCCTTCTTGAAGCAATAATTAGGCATGCCAATATGGAATACCGATTGGGAAAAATGGAGGATGCCTTCTCCTTGTATGAGCAGGCCATTGCTATTGAGAAAGGAAAAGAACATTCGCAAACATTGCCTATGTTGTTTGCACAGTATTCTCGGTTTGTATATTTGGCTTCAGGGAACGCAGAGAAGGCAAGACAGATTCTAGTTGAGGGTCTGGAGAATGTTTTGCTGTCAAAACCACTACTTGAGGCTTTATTGCATTTTGAGGCTATTCAACCCTTGCCAAAGCGCGTTGATATTGACATACTGGAGTCATGGGTTGTCAAATTCATAATGCCTAACTCAGAAAGTCCTAGTGTAGCAAGTGCAACTGAGCGTGAGGAACTATCTAGTATTTTTCTGGAGTTTTTAAATCTCTTTGGAGATGTTCAATCAATTAAAAGGGCCGAGGATAGGCATGCAAAGTTGTTTTTGCCACACAGAAGCATGTCAGAGTTGAAAAAACGTCATGCTGAGGATTTCTTAGCTTCAGACAAAATAAAAGTTTCAAGAACTTATTCTGTTCAGTCACCTGCCCAATCTGTGATTGGTGCATATTCAAATGCACAAAACCAATGGACCAATTATGGAGTACAACCTCAAACATGGCCTCCAGTTACACAAGCACAAGGACAACAGTGGACTGCTGGCTATACCCAGCAGCAGGCTTCTTATGGGGCTTATGCAGGATATGGGGGCAACTATGCAAACTCTCAATTGCCTACATCAGTTCCGCAAAGTACTGCATACGGAGCCTATCCTCCAGCGTATCCTCCACAGCCTGCGGTTCCTCAACAAAATTATGCACAACCTGTTGCAGCTCCTGCACAACAACCTGCTGCAGTTCCTCAAGCCTATTACGGCAGTTATTACTAA 2565 0.4363 MADSESVVTEASAHSAAETYASAGYAESGSNLAPEASVAVDQPAGEGAQSTSAYGFGYSNSGDANAYTGDPNSVLQQAQFNATGESKAPGGVPDANEASAGLGSTADEPAMVSDYSSSVNGGGVSALANSAGHVNGNALENVDGSADEKQLADGYAAALSAEEDRLWNIVRANSLEFTAWTSLIEETEKVAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSVDKVFEVYERAVQGVTYSVDMWLHYCIFAISTYGDPDTVRRMRATVISPLYGGKALMGLHARMLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLAIIYTRILENPNQQLDRYFGSFKELAGNRPLSELRTAEEAAAVASVTSEASGQVIEGEVHPDGAEQSPKSVSAGLTEEEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLNVGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASGRMDLANNVLARATQVFVKRQPEIHLFCARFKEQNGDIDGARAAYQLVHSETSPGLLEAIIRHANMEYRLGKMEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVEGLENVLLSKPLLEALLHFEAIQPLPKRVDIDILESWVVKFIMPNSESPSVASATEREELSSIFLEFLNLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLASDKIKVSRTYSVQSPAQSVIGAYSNAQNQWTNYGVQPQTWPPVTQAQGQQWTAGYTQQQASYGAYAGYGGNYANSQLPTSVPQSTAYGAYPPAYPPQPAVPQQNYAQPVAAPAQQPAAVPQAYYGSYY 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03054 854 MobiDBLite consensus disorder prediction 83 115 - -
Spst1g03054 854 Gene3D Tetratricopeptide repeat domain 168 356 IPR011990 GO:0005515
Spst1g03054 854 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 443 735 - -
Spst1g03054 854 SUPERFAMILY TPR-like 170 711 IPR011990 GO:0005515
Spst1g03054 854 Gene3D Tetratricopeptide repeat domain 444 746 IPR011990 GO:0005515
Spst1g03054 854 SMART hat_new_1 193 225 IPR003107 GO:0006396
Spst1g03054 854 SMART hat_new_1 464 496 IPR003107 GO:0006396
Spst1g03054 854 SMART hat_new_1 227 259 IPR003107 GO:0006396
Spst1g03054 854 SMART hat_new_1 288 319 IPR003107 GO:0006396
Spst1g03054 854 SMART hat_new_1 568 603 IPR003107 GO:0006396
Spst1g03054 854 SMART hat_new_1 609 641 IPR003107 GO:0006396
Spst1g03054 854 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 147 835 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03054 Spst-Chr1 39148655 39159049 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03054 K13217 - gmx:100787373 1385.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03054 1 39148655 39159049 Spst1g03054 1 39148655 39159049 ECH