Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03053 ATGTCTTCGTCGTATCCTGGTTCCGTTAGTGCCACACAGGTTGGCTCTTACTTTGTCGGACAGTACTATCAGATTCTCCGCCAGCAGCCGAATCTCGTTCACCAGTTCTACTCCGATTCCAGCAGTATGATTCGTGTTGACGGAGATTCAGTTGAAACCGCCCACGATGTGTTGCAAATTCATTCTATTGTCTCGTTACTGAGTTTTACTGCGATTGAGATCAAAACAATCAATTCTCTTGAATCTTGGGATGGAGGTGTGCTTGTCATGGTCTCAGGTTTTGTGAAGACAAAGGATATTAGTGGGAGGCGGAAGTTTGTTCAAACCTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTACTGAATGATATGTTTCACTTTGTTGACGAGGGAATTACGTACCCAAATATGGTGCCAGTGGCATCTGAAACGATTGACACACAGCCGCATGTGTCTTCTTCTCTTGCAGAACCTCAGGCATCTTCTGACTACGGATTGGAGGAAGAAGCCAGGGAATATGTCAACTCAGTTCATCTAGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACACGAAGATCTTGAAACAGAAGTTGTGGTGGAGGAAACTCCTGCACAGGAGGCATCTCCACCAATTCACAGTGTTGCACATACTGTCCAAGAACCTCCTGTTACTCATGTGGAAGATTCTTTGGAAGAGCCTCCTAAGAAAACTTACGCTTCTATTTTACGAGTCTCCAAAGGGCAGCCTGTGTTATCTGCTGCTTCACAGCATGTTCCTCAATATTCTTTTAAAGGTGCTCCACCTCCTTCAGAGTTCAACCACGTAGCACAGCCTGCTGTTCAGCAGGCAAGCTCTACATCTGTGTATGTCCCTGAGTCAGGGGCTGAGGCTGCAGATGAAGGCTATGGCTTAGAAGATGAAGGTGAAGTAACCTCTGTTTATGTGAGAAACTTGCCTGCTAACGTTACCGAAGCAGAGATTGACCAGGAATTTAAGAATTTTGGCAGAATTAAGCCAGATGGAATATTCATTAGGGTTCGAAAGGAAATTGGAGTGTGCTATGCATTTGTGGAATTTGAAGACATCATTGGTGTTCAAAATGCTCTTCAGGCTTCTCCAATTCAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGTTGGTGCTGCGCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCGGTTATCAAGCAGATGCTCCAAGAGGGCGTTTTGGTGCTAGGAGCATGGGAAGGGGAATTAATCAGGATAATTCAGACTACTCCAGACTAAGAAGCGATGGTTATCTTCAGCGTGGATCACGATGA 1362 0.4589 MSSSYPGSVSATQVGSYFVGQYYQILRQQPNLVHQFYSDSSSMIRVDGDSVETAHDVLQIHSIVSLLSFTAIEIKTINSLESWDGGVLVMVSGFVKTKDISGRRKFVQTFFLAPQEKGYFVLNDMFHFVDEGITYPNMVPVASETIDTQPHVSSSLAEPQASSDYGLEEEAREYVNSVHLDDDPVDKYSLPEHQQQLHEDLETEVVVEETPAQEASPPIHSVAHTVQEPPVTHVEDSLEEPPKKTYASILRVSKGQPVLSAASQHVPQYSFKGAPPPSEFNHVAQPAVQQASSTSVYVPESGAEAADEGYGLEDEGEVTSVYVRNLPANVTEAEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQASPIQLAGRQVYIEERRPNSVGAARGGRRGRGRGGYQADAPRGRFGARSMGRGINQDNSDYSRLRSDGYLQRGSR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03053 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 384 IPR000504 GO:0003723
Spst1g03053 453 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Spst1g03053 453 SUPERFAMILY NTF2-like 10 131 IPR032710 -
Spst1g03053 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 404 IPR000504 GO:0003723
Spst1g03053 453 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Spst1g03053 453 Gene3D - 302 435 IPR012677 -
Spst1g03053 453 SUPERFAMILY RNA-binding domain, RBD 316 424 IPR035979 GO:0003676
Spst1g03053 453 SMART rrm1_1 320 392 IPR000504 GO:0003723
Spst1g03053 453 CDD RRM_SF 321 392 - -
Spst1g03053 453 FunFam Nuclear transport factor 2 family protein 308 447 - -
Spst1g03053 453 CDD NTF2 10 130 IPR018222 -
Spst1g03053 453 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 10 444 IPR039539 -
Spst1g03053 453 FunFam Nuclear transport factor 2 family protein 5 132 - -
Spst1g03053 453 Gene3D - 5 133 - -
Spst1g03053 453 MobiDBLite consensus disorder prediction 396 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03053 Spst-Chr1 39140682 39145881 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03053 - - gmx:100787900 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03053 1 39140682 39145881 Spst1g03053 1 39140682 39145881 ECH