Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03052 ATGCCCCCACAGGCTAATGATTTGTACTCAAAAGGCAAGGGACAGCCACACATAAGTTATCTTGAATCAGAAAAGATGCTGCTAAGAAGCTCTTCAACGCCGGTTCTTGGATCCCTTCTTGCTTCCTTCACAGATAGTCCTAACAACAATTTTCACTCAGAAACCAGCCATGCACTTAAACACTTTCCACCAACCAGTGTCCCACCACATTATCACAAACTTTCTCTCCACCAAACTGGGTCCTTCACTCTCCCTTCCTTCTCATGTGGTTCTTCTCCGGTCTCTCCCTCGATTGGTGAGCTTGGAAGGCAAAACAAAGGCTTTAGAAGGGTTCAATCAGATGGGAACTTGCAAGACTTAGTCTACTCTTCTTGCAACAATGAAGACATGTTGGATTTTTCAGATCCTCCCAAGAGGTTTTCAGCGAGGAACAGGTGCTTGGTGCTGGAGACCATTCCTTCCTTCTCTCTGGGCAAGCACAATGGCTTGCTTGTAGAAGAGGAAGATGAAGAAATGGAAAGTGAGAGTGAAGAAGGGGAGGAGAAGAGAGGAGAGGGGTTCAGTGTGATGAATGGTATAATATTGAGTGAAGCTGTGAAAGTGAATGATGGAGTTTGCAGGGTGAGTTTTAGTGAGCAGGAAGAGGTTGGCAGTGAAAAAGAAATGTATCTTGCAAAGGGGCTTGGGCTTGAGTGCTGTGGGGATGGCATAGGTGGCTGCGGAGGTGGTGGTGGTGGTAGTAGTGATCATAATCCCTTGGGTTCTGGAGGGAATGATGGAGATAGGCATGAAGTGGAAGAATATTACAAGAAAATGGTGAAAGAAAATCCTGGGGATCCATTGTTTCTGAGGAATTATGCTAACTTCTTGTATCAGTGCAAACAGGATCGTAAAGGAGCGGAGGAGTACTATTCCCGTGCCATACTGGCAGACCCAAATGATGGAGATGTTCTATCACAGTATGGGAAGCTAGTTTGGGAGGTACACCACGACCAAGAACGTGCCTCCAGCTATTTTGAAAGAGCAGTCCAAGCCTCTCCTGAAGACAGCCATGTACATGCAGCATATGCTAGTTTCCTATGGGACGCAGAGGAAGAGGAGGATGGTAGCAATGAACCGCAGTGTTTGCCGCCTCATCCTCATCAAGGAGCTATGGCTACAGCAGGTGCTTGA 1173 0.468 MPPQANDLYSKGKGQPHISYLESEKMLLRSSSTPVLGSLLASFTDSPNNNFHSETSHALKHFPPTSVPPHYHKLSLHQTGSFTLPSFSCGSSPVSPSIGELGRQNKGFRRVQSDGNLQDLVYSSCNNEDMLDFSDPPKRFSARNRCLVLETIPSFSLGKHNGLLVEEEDEEMESESEEGEEKRGEGFSVMNGIILSEAVKVNDGVCRVSFSEQEEVGSEKEMYLAKGLGLECCGDGIGGCGGGGGGSSDHNPLGSGGNDGDRHEVEEYYKKMVKENPGDPLFLRNYANFLYQCKQDRKGAEEYYSRAILADPNDGDVLSQYGKLVWEVHHDQERASSYFERAVQASPEDSHVHAAYASFLWDAEEEEDGSNEPQCLPPHPHQGAMATAGA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03052 390 SMART hat_new_1 295 327 IPR003107 GO:0006396
Spst1g03052 390 SMART hat_new_1 260 292 IPR003107 GO:0006396
Spst1g03052 390 SMART hat_new_1 330 362 IPR003107 GO:0006396
Spst1g03052 390 MobiDBLite consensus disorder prediction 166 185 - -
Spst1g03052 390 SUPERFAMILY TPR-like 260 368 IPR011990 GO:0005515
Spst1g03052 390 Coils Coil 165 185 - -
Spst1g03052 390 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 26 364 - -
Spst1g03052 390 Gene3D Tetratricopeptide repeat domain 197 368 IPR011990 GO:0005515
Spst1g03052 390 MobiDBLite consensus disorder prediction 367 390 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03052 - - gmx:100788436 535.413