LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g03047	ATGAGTGGCTGTCTGTGTTACACGTACTTTGCTCTGTTCAATTCCCACAACACAACACAATGTTACTGCGTTCTTTCTTTGTTCTACTACTACACACGATTCGTCGCAGCTATAATGGCAGCTTCTTTCCATTCCTTCACGTTCTCCTTCTCACTCTCAAATACTCTTCACAACTCACGTTCATCTTCAGTCCCATCTATGATTTTTCATCACAGTAAACACTCTTCATTCAATGGCCAATCTGTAAACATGCAACGTTTGAGGCTATCCAAGCTAAAGAAAAATCCTCCGACACACATGCCTGTTATCATGATGATGGTCAAACCAACCATACAGTTCATCAAGGGAACTGATGAACAGACAATACCAGATGTGAGGCTTACTACATCACGTGATGGAACAAATGGTATGGCCATCTTCAATTTTGATCAACCCTCAGTTTTTGATTCTTCTCGTGAAGTTGGTGATATCACTGGTTTATACATGATTGATGAGGAAGGGGTCCTTCAGTCTGTTGATGTTAGTGCTAAGTTTGTCAATGGAAAACCCTCAGGAATTGAAGCCAAGTATGTGATGCGGACTCCACGGGACTGGGACAGATTTATGAGATTCATGGAACGATATTCTGATGCAAATGGCTTGCAATTCATTAAAAAATAA	660	0.4076	MSGCLCYTYFALFNSHNTTQCYCVLSLFYYYTRFVAAIMAASFHSFTFSFSLSNTLHNSRSSSVPSMIFHHSKHSSFNGQSVNMQRLRLSKLKKNPPTHMPVIMMMVKPTIQFIKGTDEQTIPDVRLTTSRDGTNGMAIFNFDQPSVFDSSREVGDITGLYMIDEEGVLQSVDVSAKFVNGKPSGIEAKYVMRTPRDWDRFMRFMERYSDANGLQFIKK	219

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g03047	219	NCBIfam	photosystem II reaction center protein Psb28	111	217	IPR005610	GO:0009523\|GO:0009654\|GO:0015979\|GO:0016020
	Spst1g03047	219	Pfam	Psb28 protein	111	216	IPR005610	GO:0009523\|GO:0009654\|GO:0015979\|GO:0016020
	Spst1g03047	219	FunFam	Photosystem II reaction center Psb28 protein	109	219	-	-
	Spst1g03047	219	Hamap	Photosystem II reaction center Psb28 protein [psb28].	108	217	IPR005610	GO:0009523\|GO:0009654\|GO:0015979\|GO:0016020
	Spst1g03047	219	PANTHER	-	41	219	IPR005610	GO:0009523\|GO:0009654\|GO:0015979\|GO:0016020
	Spst1g03047	219	Gene3D	Photosystem II Psb28	109	219	IPR038676	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g03047	Spst-Chr1	39091859	39092803	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g03047	K08903		-	gmx:100306491	265.003

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst1g03047	1	39091859	39092803	Spst1g03047	1	39091859	39092803	ECH
	Spst1g03047	1	39091859	39092803	Spst7g00676	7	6687485	6688971	PCT