Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03035 ATGGAGGAGGAGGGTGACATAGACGACGGTGTTAGAGCTCAGTTTCCTCTGTCGTTCGGGAAGCAATCGAAGCCTCAAACGCCTCTCGAAGCCATCCACAATGCGACACGTCGTTCCACTTCCAATCCCAATTCCAAAACCACCAACCAACTTCCCTCTCTCTTCTCCTCTTCCAGGGAATGGCTCAAGTCCCTCCGTCCTTCCAAAAACCCTATTCCTCCGCCGCCTCCCGATCACGACGATGCCCCCATTGTGGGACCGCCTCCGCCGCCACCTGCAGCTTCGGACGACGAGGACGAGGACGGCGACATGATTGGCCCGCCCCCGCCGCCACCGAACGCGTCGGAGTCCGAAGACGATTCGGATGAAGACGAGGTAGGGGCCCGATTCCGGATTCCCCTTAGCAACGAAATTGTTCTCAAAGGTCACACCAAGGTTGTGTCAGCTCTTGCTGTGGATCATACAGGATCTAGAGTGCTTTCTGGAAGCTATGACTATACAGTACGAATGTATGACTTTCAAGGAATGAATGCTCGATTGGAATCGTTTCGACAGCTGGAGCCATTTGAAGGTCATCAAGTTCGCAATTTAAGCTGGAGTCCAACTGCAGATCGCTTTTTGTGCGTGACTGGATCAGCTCAAGCAAAGATTTATGATCGTGATGGGCTTACTTTGGGAGAGTTTGTGAAGGGGGACATGTATATTCGTGATCTAAAGAATACCAAGGGCCACATATCTGGATTGACATGTGGAGAGTGGCATCCAAATACTAAAGAGACCATTTTAACATCATCAGAGGATGGCTCACTACGCATGTGGGATGTTAATGACTTCAAAAGTCAGAAGCAGGTCATTAAACCAAAGCTTGCGAGACCTGGAAGAGTCCCCGTCACCACATGTGCATGGGATCGTGATGGTAAATGCATTGCTGGTGGTATAGGAGATGGATCTATCCAGATTTGGAATATTAAGCCTGGTTGGGGGAGTAGACCAGATCTACACATTGAAAAAGGTCATGAAGATGATATTAGTAGTCTGAAATTTTCTAGTGATGGGAGAATCTTATTGTCAAGGAGTTTTGATGGTTCACTGAAGGTTTGGGATCTACGGAAAATAAGAGAACCATTAAAGGTATTTGAGGATCTGCCAAATCACTATGGACAAACAAATATTGCCTTCAGTCCTGATGAGCAACTCTTTTTGACTGGAACATCTGTGGAAAGGGAGAGCTCAACAGGAGGTTTATTGTGCTTCTTCGATAGAGTAAACCTTGAGCTTGTATCAAGAGTTGGCATATCATCCACTTGTAGTGTTGTTCAGTGTTATTGGCATCCTAAACTGAATCAGATCCTTGCTACTACTGGTGATAAAAGCCAAGGAGGCACTCACATACTATACGATCTAACCCTAAGTGAGAGAGGAGCTCTTGTATGTGTTGCCCGTGCACCAAGGAAAAAATCAATTGATGACTTTGAGGCAAAACCTGTCATTCACAATCCTCACGCATTACCACTATTTAGAGATCAGCCAAGCCGTAAGCGTCAGCGAGAGAAAATACTAAAGGATCCATTGAAGTCCCATAAGCCTGAATTACCAATTACAGGTCCTGGATTTGGTGGACGAGTTGGTACTAGTCAAGGAAGCTTACTGACCCAGTATCTTCTAAAGAAAGGAGGCATGATCAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATCCTGAAATATGCTGATGTTGCAGCGAAGGATCCAAAATTTATTGCTCCAGCATATGCAGAAACCCAACCTGAGCCCGTTTTTGCCAAGTCAGATTCTGAGGATGAAGAGAAATGA 1836 0.4641 MEEEGDIDDGVRAQFPLSFGKQSKPQTPLEAIHNATRRSTSNPNSKTTNQLPSLFSSSREWLKSLRPSKNPIPPPPPDHDDAPIVGPPPPPPAASDDEDEDGDMIGPPPPPPNASESEDDSDEDEVGARFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYTVRMYDFQGMNARLESFRQLEPFEGHQVRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTCGEWHPNTKETILTSSEDGSLRMWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDRDGKCIAGGIGDGSIQIWNIKPGWGSRPDLHIEKGHEDDISSLKFSSDGRILLSRSFDGSLKVWDLRKIREPLKVFEDLPNHYGQTNIAFSPDEQLFLTGTSVERESSTGGLLCFFDRVNLELVSRVGISSTCSVVQCYWHPKLNQILATTGDKSQGGTHILYDLTLSERGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKILKDPLKSHKPELPITGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWMEEDPREAILKYADVAAKDPKFIAPAYAETQPEPVFAKSDSEDEEK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03035 611 CDD WD40 139 458 - -
Spst1g03035 611 MobiDBLite consensus disorder prediction 592 611 - -
Spst1g03035 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 140 174 - -
Spst1g03035 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 181 IPR001680 GO:0005515
Spst1g03035 611 MobiDBLite consensus disorder prediction 1 125 - -
Spst1g03035 611 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 8 610 - -
Spst1g03035 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 370 IPR001680 GO:0005515
Spst1g03035 611 MobiDBLite consensus disorder prediction 68 93 - -
Spst1g03035 611 SUPERFAMILY WD40 repeat-like 124 457 IPR036322 GO:0005515
Spst1g03035 611 Gene3D - 92 228 IPR015943 GO:0005515
Spst1g03035 611 Gene3D - 229 469 IPR015943 GO:0005515
Spst1g03035 611 SMART WD40_4 278 322 IPR001680 GO:0005515
Spst1g03035 611 SMART WD40_4 133 172 IPR001680 GO:0005515
Spst1g03035 611 SMART WD40_4 329 368 IPR001680 GO:0005515
Spst1g03035 611 SMART WD40_4 182 219 IPR001680 GO:0005515
Spst1g03035 611 SMART WD40_4 231 274 IPR001680 GO:0005515
Spst1g03035 611 Pfam WD domain, G-beta repeat 239 274 IPR001680 GO:0005515
Spst1g03035 611 Pfam WD domain, G-beta repeat 138 172 IPR001680 GO:0005515
Spst1g03035 611 Pfam WD domain, G-beta repeat 296 322 IPR001680 GO:0005515
Spst1g03035 611 Pfam WD domain, G-beta repeat 334 368 IPR001680 GO:0005515
Spst1g03035 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 336 370 - -
Spst1g03035 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 283 IPR001680 GO:0005515
Spst1g03035 611 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Spst1g03035 611 PRINTS G protein beta WD-40 repeat signature 309 323 IPR020472 -
Spst1g03035 611 PRINTS G protein beta WD-40 repeat signature 355 369 IPR020472 -
Spst1g03035 611 FunFam WD repeat-containing protein 70 229 471 - -
Spst1g03035 611 ProSitePatterns Trp-Asp (WD) repeats signature. 261 275 IPR019775 -
Spst1g03035 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 276 - -
Spst1g03035 611 ProSitePatterns Trp-Asp (WD) repeats signature. 309 323 IPR019775 -
Spst1g03035 611 FunFam Nucleotide binding protein 87 228 - -
Spst1g03035 611 MobiDBLite consensus disorder prediction 19 64 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03035 243 441 Miscellaneous Gene Families AT5G08390 25.000 1.15e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03035 K24752 - gmx:100815380 1062.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03035 1 38944055 38948111 Spst1g03035 1 38944055 38948111 ECH