Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03030 ATGAAAATGGAGCTAAAAGGAGAGGCTGAACTTCAGGAGGAGAGACCCTCATCACCAATGCGGGTCCTGCAGCATTTTTCTGGGGGGGCATTCAGAGTTGCAGGGGAAGCATTGCACAATATGTATTCTAATGGGGGCTCAGGCATGCCAAATATGGGGTCTCCTGGTGTGCATAGACGTTCTCAGAGTGAGCTTGTTTGCAGAGGAGTTCAGCGTAATAATAGCCTTCAGAAATTAAAATCTCATGTGCACAGGGCTTGGCGTTGGGGTGGCAAATCCCGCGAAGAAGATTCCCTGGCTAATTTTAACCCTGAGGTCATGGCAAACCAGAAACGACAGTGGTATCGGCTTCATCCTAAAAGTCCGGATTGTGTACATAATAAGGAGCCACCATCGCTCTTTGAACATTTTGTGATTGTGGGGCTGCATCCAGATGCCAATTTGGAAGCCGTGGAGCATTCATTTGCAAGAAGGAAGAAGTGGGAAAAGAATAAAGGAAGACCTGAATTTATAGATTACAGAAAGCCTCAGGAACAAAGGGCACAAGAACCAACTTTGGAACCTCAGTTACTGTTCAAATATCCTCCTGCAAAGAAGCTGACAATGCGAATGAAAGATTTAGCTCCCTTTTGCTTTCCTGAAGGTGTTAAGGCATGGTTGTTGGAGAGGACTCCATCTCTTAGTGAACTTAATGAACTTGTCTATGGACAGGAACATTTAGGAAAAGACGATCTTTCATTTGTCTTTGCAGTCAAGGCAGCAGACAATACAACACTTTATGGAGTTTGCTTACATGTGCCTGAAATTGTTCAGAGGCCCCCTGGTATCTTAGGCATATCATCTTCTTTTTCTCATCCCTCTGGGGTCAGCCGTTTTCTGGTTTCTGCACCTCGCTGTTACTGTCTTCTGACTAGAGTTCCCTTCTTTGAGTTACACTTTGAGATGTTAAACAGTCTCATTGCACAGGACCGCCTGAATAGGATAACTCAGTTTATAAATGAGATGACTCTCACTGGCAGCGTTCCATCATCACCCCAACTAGGTGATCAAATGAGTTCAAAGGCTAACTCCCCGGAGAGGGAGTCATTTAGTGACTGGATGGATTCTGCAATTCCTGTTGATGGTGCAGCTGTTATTACTGCTGCAGCTGCTGGGATTATATCTGATGATGAAGCCCTACAGTTATCACCTAAAATATGTGATTCTCACTGCCAGTCTCCTGTAAGTGTGACGGCCAGTGAGTCTCCACATTTTTCTCAGGTCAGGGATGTAGACAAGGATGACAAGAAGAATATCCAAGTTCTTGATAATGCTGCTTTCAAGGCACCAGAAACTCTTCGTTCTATACCAAGAATGCATGGAAATTGCGAAAATGGCCAAGTTTCTCCAAAAGTTAGAACACCTTCTAATCAGATTCTTGCCTTGGAGCGCCTTGGAAGTTCCGAATCACTTTTCAGTCCAGTTAGAAGCATGGCATTAGAAGATGATGACGAGTTTTTCTCAAACAACGAAAGAGATTATGGGGATGACTTGTTAATGGAATGGGCCATGGAGAATAAGAATGATTTGCTACAAATAGTTTGTAGATACCATGCTCAACCTATTCCACCTCGAGGAAGTGAATTTGTCTTCCACCCTCTCGAACATCTACAAGCTATTCAGTACATACGACATTCAGTTGCTGCTCTAGGCATCGGAGATGATTTTAATTGTTCTGAACCAGCTCAGGACAACACGAAGCTGGCAGCAGCTGAGGAAGCTCTATCATTATCAGTATGGACAATGGCGACTACTTGTCGAGTTCTGTCCCTTGATAGTTTTAGTTATTCTAGTGATGTCATTAATTACAGGAGTCTTGTTGGAAAAGCAGGTGGTAATAATGTGCCCGAATCTGAGTGGAATTGCAACCTGCCTTTCATTTTGGCAATTTTTGACATGATGCAGGGTGTTCTATCTGCCACAGTGCTTTCTCTCATTCCCATGATTCGTCCTTTTCAGTGGCAGAGTTTATTGCTCCCGATTTTACCTGGGACAATGATCGATTTTCTTGATGCCCCAGTTCCATATATTGTTGGCATCCAACATAGACCAGATAACTTGAATATGAGAACTACTAATCTTGTTCTTGTTAATATACTGAAGGACCAGGTTACAATGTGTCCATTACCAAAACTTCCACAGCATAAAGAGCTTCTCTCTCAGTTGGCTCCATTTCATGCTAGACTTTCAAATGAAAGATCAATTGCTAGAAAGCATCCTGTACATAGGTGCAACGAAGTCCAGGCCGAAGCTGCAACTAAGTTTTTGAACATAATGTGGCACTATTTGGAGTCACTTTGTTCAGATCTGAAATCCCACACGATAACTAGTGTACAATCAAACAAAGATAGGGTTTCTTTACTTCTTAAAGATAGCTTCATTGATTCCTTTCCTGCTAGGGATCAACCATTCATTAAGCTTTTTGTAGATACACAGCTCTTCACTGTTTTATCAGATACTCGTTTGTCAAGCTTTGAGAGTGGCCAGTCATAG 2532 0.4277 MKMELKGEAELQEERPSSPMRVLQHFSGGAFRVAGEALHNMYSNGGSGMPNMGSPGVHRRSQSELVCRGVQRNNSLQKLKSHVHRAWRWGGKSREEDSLANFNPEVMANQKRQWYRLHPKSPDCVHNKEPPSLFEHFVIVGLHPDANLEAVEHSFARRKKWEKNKGRPEFIDYRKPQEQRAQEPTLEPQLLFKYPPAKKLTMRMKDLAPFCFPEGVKAWLLERTPSLSELNELVYGQEHLGKDDLSFVFAVKAADNTTLYGVCLHVPEIVQRPPGILGISSSFSHPSGVSRFLVSAPRCYCLLTRVPFFELHFEMLNSLIAQDRLNRITQFINEMTLTGSVPSSPQLGDQMSSKANSPERESFSDWMDSAIPVDGAAVITAAAAGIISDDEALQLSPKICDSHCQSPVSVTASESPHFSQVRDVDKDDKKNIQVLDNAAFKAPETLRSIPRMHGNCENGQVSPKVRTPSNQILALERLGSSESLFSPVRSMALEDDDEFFSNNERDYGDDLLMEWAMENKNDLLQIVCRYHAQPIPPRGSEFVFHPLEHLQAIQYIRHSVAALGIGDDFNCSEPAQDNTKLAAAEEALSLSVWTMATTCRVLSLDSFSYSSDVINYRSLVGKAGGNNVPESEWNCNLPFILAIFDMMQGVLSATVLSLIPMIRPFQWQSLLLPILPGTMIDFLDAPVPYIVGIQHRPDNLNMRTTNLVLVNILKDQVTMCPLPKLPQHKELLSQLAPFHARLSNERSIARKHPVHRCNEVQAEAATKFLNIMWHYLESLCSDLKSHTITSVQSNKDRVSLLLKDSFIDSFPARDQPFIKLFVDTQLFTVLSDTRLSSFESGQS 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03030 843 Pfam DENN (AEX-3) domain 650 713 IPR001194 -
Spst1g03030 843 Gene3D - 123 344 - -
Spst1g03030 843 SMART uDENN_cls 130 267 IPR005113 -
Spst1g03030 843 MobiDBLite consensus disorder prediction 1 15 - -
Spst1g03030 843 MobiDBLite consensus disorder prediction 1 20 - -
Spst1g03030 843 ProSiteProfiles Tripartite DENN domain profile. 169 841 IPR037516 -
Spst1g03030 843 Pfam uDENN domain 188 266 IPR005113 -
Spst1g03030 843 Gene3D - 641 777 IPR043153 -
Spst1g03030 843 PANTHER DENN DOMAIN-CONTAINING PROTEIN 2 69 606 - -
Spst1g03030 843 SMART DENN_cls 295 715 IPR001194 -
Spst1g03030 843 MobiDBLite consensus disorder prediction 340 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03030 Spst-Chr1 38917372 38926285 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03030 - - gmx:100814487 1318.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03030 1 38917372 38926285 Spst1g03030 1 38917372 38926285 ECH