Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03028 ATGGCGGATTTAGAAAATTTACTCTTGGAGGCGGCTGGGAGAACCCGACACTCTCGTCCAACTTTAAGAAGGGAGGATGATTCGGATGATGAACATGATTATCAACGAAATCACTCTGGTTCACAGGTTACTCTAAAGAGGAGATTTGATCCAAAGGAAAGAGATGATGATGGCAAGGGAAGTCGGGAAGAAGGGGATGATAATGTTGGTGACCGATCTGATCACAAGGGTGCTAGTAGCGATGAATCTGATTTTGGTGATGATCTTTATAAGAATGAAGATGATAGGCGTAAACTTTCTGAGATGACTGAACTTCAAAGAGAGATGATATTGTCAGATAGGGCTACCAAGAAGTATGATAAAGATTTTTTGGGGAAGATAGCATCAAAGCGGGAGAAGGGAAAGACAACTATACCTCGGAAACAGACTTCACCTCCCTCACCATCTCGTGTGCGTTCATCAGTCAGATCAGCTGATAGGTCAACTGCCAAGCATGGTGCATTAAATGAATTGCGTGCAAAAAGATTAAAGCAGCAAGATTCAGAAGCCAACCGCAGACTAAGTAAGGCATCCAAAAGTTCAGGGCCTGTAAAGGTTTCACCAAAGCACAAACCCTTTTCTTCAACAAGTCTCACTAGTTCCAGTGACAGTGAAAATAGGTCCCTCAGTGATGATGAAGAGTCAAGTGATGACGACAGAATCATTGACAGTGATGATGACCGGATAATGTTAAGATCTGAAGGGCTTTCATTTGAGGATATAAAAGAAATCACCATTCGCAGATCGAAACTTGCAAAATGGCTCATGGAGCCCTTTTTTGAGGAGTTAATTGCTGGTTGTTTTGTAAGAGTTGGTATTGGTAGATCAAAGTTTGGGCCTATCTACAGGCTCTGCATGGTAAAAAATGTTGATGCCACAGATTGTGATCGACAGTATAAATTTGAAAATAAAATCACACACAAGTACTTAAATCTTGTCTGGGGAAATGAAACTTCTGCTGCAAGGTGGCAAATGGCTATGGTTAGCGACTCTCTTCCACTTGAGGAGGAGTTCATCCAATGGGTTAAGGAAGTAGAACAAAGAGGTGGTCGGATGCCAACAAAGCTAGAAGTGGAAGAAAAAAAACAAGCTATACAAAAGACCAACTTGTTTGTTTACTCAGCAGCTACTGTGAAGCAGATGTTGCAAGAGAAAAAATCTGCCAAAACAAGGCCACTAAATATTGCAGCTGAGAAAGATCGGTTAAGGACGCAATTAGAAATAGCACAGAGTAAGCAAAATAAAGCTGAAGTGAAGAGTATCATGACAAGATTGCAAGAATTGGAGGAATCTCGGCAGTCTAAGGAGAAGGATGCCAGGGCTTTGAAGCTTTCTGAGATGAATAGAAAGAACAGGTTTGAGAACTTCAAAAATGCTTCTGAATTGAAGCCAATAAATAAGGATTTGAAAGCAGGGGAGGCGGGTTATGATCCATTTTCAAGGAGGTGGACTAGATCAAGAAATTACTATGCCGCAAAACCAGCTGAAGAGGCTGCAGCTGAAAATGACAGTGCCAGTGATGCGGTGGCTGATGTACGCAGCTATCAGACGGGAACAGCTGGGACAGTGGTGGCTGGCATGGCGGCTACTGCTGCAGCTTTGAAAGCTGCTGCCGGTGCTGGTAAGTTAGTAGACACAAGTGCTCCGGTGGATCAAGGAACAGTGTCAAACGTGCTGCACGATTTTGAGCTGCCAATATCATTATCCATACTCCAAAACTTTGGTGGAGCCCAAGGAGTTCAGGCGGGGTTTATGGCTAAAAAACAGAGAATAGAAGCAATTATTGGATTTCAAGTCCCGGAAAAAAATGATTGGAGGGATGCGCTGACATTAACAATTAGTGATTACAAGAGAAGAAGAGGCCTTCTTTGA 1911 0.427 MADLENLLLEAAGRTRHSRPTLRREDDSDDEHDYQRNHSGSQVTLKRRFDPKERDDDGKGSREEGDDNVGDRSDHKGASSDESDFGDDLYKNEDDRRKLSEMTELQREMILSDRATKKYDKDFLGKIASKREKGKTTIPRKQTSPPSPSRVRSSVRSADRSTAKHGALNELRAKRLKQQDSEANRRLSKASKSSGPVKVSPKHKPFSSTSLTSSSDSENRSLSDDEESSDDDRIIDSDDDRIMLRSEGLSFEDIKEITIRRSKLAKWLMEPFFEELIAGCFVRVGIGRSKFGPIYRLCMVKNVDATDCDRQYKFENKITHKYLNLVWGNETSAARWQMAMVSDSLPLEEEFIQWVKEVEQRGGRMPTKLEVEEKKQAIQKTNLFVYSAATVKQMLQEKKSAKTRPLNIAAEKDRLRTQLEIAQSKQNKAEVKSIMTRLQELEESRQSKEKDARALKLSEMNRKNRFENFKNASELKPINKDLKAGEAGYDPFSRRWTRSRNYYAAKPAEEAAAENDSASDAVADVRSYQTGTAGTVVAGMAATAAALKAAAGAGKLVDTSAPVDQGTVSNVLHDFELPISLSILQNFGGAQGVQAGFMAKKQRIEAIIGFQVPEKNDWRDALTLTISDYKRRRGLL 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03028 636 PANTHER UNCHARACTERIZED 61 635 - -
Spst1g03028 636 MobiDBLite consensus disorder prediction 139 156 - -
Spst1g03028 636 Gene3D - 249 381 IPR036128 GO:0003677
Spst1g03028 636 Coils Coil 412 458 - -
Spst1g03028 636 SUPERFAMILY Plus3-like 250 380 IPR036128 GO:0003677
Spst1g03028 636 SMART rtf1 248 360 IPR004343 GO:0003677
Spst1g03028 636 MobiDBLite consensus disorder prediction 203 218 - -
Spst1g03028 636 MobiDBLite consensus disorder prediction 1 235 - -
Spst1g03028 636 MobiDBLite consensus disorder prediction 157 187 - -
Spst1g03028 636 FunFam RNA polymerase-associated protein RTF1 249 381 - -
Spst1g03028 636 MobiDBLite consensus disorder prediction 10 138 - -
Spst1g03028 636 Pfam Plus-3 domain 253 358 IPR004343 GO:0003677
Spst1g03028 636 ProSiteProfiles Plus3 domain profile. 248 383 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03028 Spst-Chr1 38903885 38905795 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03028 K15178 - gmx:100817324 883.248