Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03025 ATGACGGGATTTCCTCGCCCGCGCGATCACGCTTCTTCCTCCTCGCACAATTCCAACAGCAGTGGTAGCAATGTATTCAATTTGCTCGCAAGGAGAGAGATCTCACCCCGAACAAAGTACGTGGCCAAATGGCATTGGGGAGAAGTTTCTAAGTCAAAGTCTGGTCCTTACTCTCGTTCCAAGAATGAGGTTGTGAGAGATGCAAGACGAGGTCTCCTCTCGTGGGTTGAGGCTGAGTCATTACGGCATTTGTCAGCTAAGTATTGTCCTTTATTGCCTCCTCCCCGGTCTACTATTGCAGCAGCATTTAGTTCTGATGGGAAAGTTCTTGCCTCCACTCATGGTGATCACACAGTAAAGATAATTGATTGTGAGACTGGAAGTTGCTTAAAGGTGTTAGTTGGCCATAGGAGAACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCCACATATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGATTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTACCGCCCCATTGCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTGCTGTTGCATCTGGCCACAAGTTGTACATATGGCACCACAACAAGAAAGGTGAAGCATCCTCACCCATATTTGTGTTGAAGACAAAGCGGTCACTTCGGGCTGTGCATTTTCATCCACATGCAGCGCCCTATCTTTTAACTGCGGAGGTCAATGATCTTGACTCTTCTGATTCCTCAATGACAGAGGCAACATCTCTTGGCTATTTACAATATCCTCCGCCTGCTGTTTTTGTCACAAATATTCATCCTTCAGAACATATAAGTTTGTCCGGCGAACTGCCTTATGTGTCATTACCTTTCCTTTTTATGCCCTCATATACTGTTGACGAGTCAAGAGCAGAAATACAACATTCTAGTCAGGAGGTGGGCTCAGGAAGCATGCAAATTGAGTCTTCTGCCATGGTACAGTTACAAGCAGACACAAGTGCAACAGAACAATATGAGGCTACAGTGTCTCCCATGGATACATTCTCCGAGGTGCCCACTAGTTCTCAAACTGGTATAGAATATCCGGCTCATACTGCTTTCTCTAATGGAATGGGAATTGGCCTCAGTAATCTCACAATGGATGGTATGGAGACTGATGAGACCAGACCTGCTGAAGGAAGCCAACATGGAAACTCTACCAATACCTATTCTCTTAATGGTGTGCTACATGGACTGTCTAGGCCAACATCCAACCGAGGGGTTCCCTCTGAGCTTGGTCAATTTCATCAGTTTTTTCCTTCTAGTTCAAGAGACCCAAGTGCGTGGGAGTTGCCTTTTCTCCAAGGATGGTTAATGGGTCAAAGCCAAGTTGGTGTTCCTTCAATGCTTCCTCACATGGGTGCTAGTCGAGACATTCTAGCCCAACAGATTGGTGCTTCTACAATGCCATCTAATCTTTCCAGTTCTAATGTTGATGCAGCAGTGTCATCTTCAGCAATCACTGGCAGCATCAGCATACCAGCTTCTTCAATGAGATCAGGTTTACGGAATCATTTTTCACAATTCCGGCAACCTGTATCTGAATCCAGCAATCTCGCAGCTTCTATTAATAATCCACATGATGGATCCGATATCCAAACGATTATGAATCGAATTCAGTCAGAACTTGCTGCTACATCAGTGGCTGCTGCAGCAGCTGCAGAGTTACCTTGCACTGTGAAGTTAAGAGTATGGTCACATGACATTAAAAATCCATGTGTCCCACTTAATGCTGATAGATGTCGTCTAACCATACCACATGCTGTCCTCTGCAGTGAAATGGGTGCTCATTTTTCACCATGTGGTAGATTTTTAGCTGCCTGTGTCGCATGTATGCTTCCTCATATAGAAGCTGATCCAGGCTTACAAACTCCAGTACACCAAGAGCCTGGTGTTGCAACATCACCAACCCGGCATCCAATCTCAGCACATCAAGTTATGTATGAACTTCGGATATATTCCCTTGAGGAGGCAACATTTGGGTTGGTACTTGCTTCACGGGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGTTCTCTCCTACATCTGAGCACATACTACTTGCCTATGGTCGACGCCATGGTTCACTTCTTAAAAGTATTGTCATTGATGGCGAAACAACATTACCTATATATACAGTGCTAGAGGTATACAGAGTGTCAGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGACGAGGTGAATGTGGCATGCTTTCATCCTTTTGCTGGGGGAGGTCTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGGTCCTCCAGTATGACGGTGTTCATGAAGTGAATGGCAACGGACCAAGTTACTTTCCTGAGGAGACCATCATTGGAGTCAGTCAAGGAGAATTAGCGGTAGGCTATGCGGATTATGCGATCATCTACACTCATGGTACTGATGTGATGATCATGGCAAAACGACATCCATTTTTTGGTGGGGTGAAACGGCCATGA 2523 0.4499 MTGFPRPRDHASSSSHNSNSSGSNVFNLLARREISPRTKYVAKWHWGEVSKSKSGPYSRSKNEVVRDARRGLLSWVEAESLRHLSAKYCPLLPPPRSTIAAAFSSDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPWVVRFHPLHPHILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHKLYIWHHNKKGEASSPIFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLQYPPPAVFVTNIHPSEHISLSGELPYVSLPFLFMPSYTVDESRAEIQHSSQEVGSGSMQIESSAMVQLQADTSATEQYEATVSPMDTFSEVPTSSQTGIEYPAHTAFSNGMGIGLSNLTMDGMETDETRPAEGSQHGNSTNTYSLNGVLHGLSRPTSNRGVPSELGQFHQFFPSSSRDPSAWELPFLQGWLMGQSQVGVPSMLPHMGASRDILAQQIGASTMPSNLSSSNVDAAVSSSAITGSISIPASSMRSGLRNHFSQFRQPVSESSNLAASINNPHDGSDIQTIMNRIQSELAATSVAAAAAAELPCTVKLRVWSHDIKNPCVPLNADRCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPVHQEPGVATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGVHEVNGNGPSYFPEETIIGVSQGELAVGYADYAIIYTHGTDVMIMAKRHPFFGGVKRP 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03025 840 SUPERFAMILY WD40 repeat-like 613 781 IPR036322 GO:0005515
Spst1g03025 840 MobiDBLite consensus disorder prediction 7 23 - -
Spst1g03025 840 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 20 800 - -
Spst1g03025 840 SMART WD40_4 85 123 IPR001680 GO:0005515
Spst1g03025 840 SMART WD40_4 169 206 IPR001680 GO:0005515
Spst1g03025 840 SMART WD40_4 739 779 IPR001680 GO:0005515
Spst1g03025 840 SMART WD40_4 126 166 IPR001680 GO:0005515
Spst1g03025 840 ProSitePatterns Trp-Asp (WD) repeats signature. 153 167 IPR019775 -
Spst1g03025 840 SUPERFAMILY WD40 repeat-like 100 242 IPR036322 GO:0005515
Spst1g03025 840 Gene3D - 82 255 IPR015943 GO:0005515
Spst1g03025 840 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 171 - -
Spst1g03025 840 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g03025 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 175 IPR001680 GO:0005515
Spst1g03025 840 FunFam Activating molecule in BECN1-regulated autophagy protein 80 260 - -
Spst1g03025 840 Pfam WD domain, G-beta repeat 127 166 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03025 100 267 Miscellaneous Gene Families AT5G08390 25.414 3.36e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03025 K17985 - gmx:100817857 1441.4