Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03024 ATGGAGAATCCTTGCGAGGTACTCGGTTCCAAAGGGTTGATTAGAAGGCATGAATTCGTTAGGATCATAATCCAGTGTCTATATTCATTAGGTTACAGCAACTCTGCGTCGTGTTTGGAGTTAGAATCTGGCGTTTCGTACAAGTCCAATGAGCTTAAGTTGCTTGAATCACTTATATTGAATGGGAATTGGGAAGATAGCATTGAATATCTCAATTCCATACAGGATGTGTTGGGGGAAACAAGGGAATCTGCGATGTTTCTTGTTTTCAGACAGTGTGTTATGGAGTATTTGAATTGCGGTGAAGATGCGTTAGCTTTAGGGGTATTAAGGAAACAGGTTTCTGCCTTGGATGTGGACAACTGCAAAGTTCACAGTCTGGCTATGTGCTTACTTTCATTCAAGGATAGAGAATTAGGTGGAATTGGTGATGATGATGTTGTTGTACGTGATTTGAGAAGAAAGTTGATAGCAGATTTGGAAAATTTGTTGCCTCCTCCGATTTCATTGCCTGAAGCAAGGCTGGAGCACTTGGTAGAATCTACTGTTACGGCCTGGGTCGATTCGTGTATGTATCATAGTTCGTCAAATCGGCTATCGCTTTATGAGGATCATTGCTGCAGTAGGGATCAGATTCCTACTAGAACGACTCAGATTTTGACTGGACATAAAAATGAAGTTTGGTTTGTTCAATTTTCTAATAATGGGGAGTACCTAGCCTCTTCATCCAATGATTGCACTGCCATCATATGGAAGGTGCTGGAGGATGGGATATTGACACTGAAACACACACTTAATGGTCACCAACATGCTGTATCTTTTGTAGCATGGAGTCCTGATGACACCAAGTTACTAACATGCGGGAACACAGAAGTTTTGAAGCTGTGGGATGTGGAAACAGGTACATGCAAGCACACATTTGGGAATCAAGGCTTTGTTGTCAGCTCTTGTGCCTGGTTTCCCAACTCAAAACAATTTGCGTGTGGCAGTTCTGACCCTGAAAAGGGTGTTTGCATGTGGGATTGTGATGGAAACGTGATCAAATCATGGAGAGGAATGAGGATGCCCAAGGTTGTTGATCTTGCTGTTACTCCAGACGGTGAGTATCTTATCAGCATCTTTATGGATAAAGAAATTCGTATTCTGCATATGGGAACAAATGCTGAGCGAGTCATTTCAGAGGAGCACCCAATCACATCCCTTTCAGTTTCAGGAGATAGTAAGTTCTTCATTGTCAATCTAAACAGTCAGGAGATTCATATGTGGGATGTGGCTGGGAAATGGGATAAGCCATCGAGGTTTACGGGCCACAAGCAACACAAGTATGTTATAAGGTCATGCTTTGGTGGATTGAATAACACTTTTATCGCCAGTGGTAGTGAAAATTCACAGGTATACATTTGGAACTGCCGGAACCCGACTCCTATAGAGGTTCTATCTGGGCACTCCATGACTGTAAACTGTGTGAGCTGGAACCCCAAAATACCACAAATGTTGGCATCTGCGAGTGATGATTACACAATTCGTATATGGGGACCCAGCTTCCTTAAAATGGGAATGCCAAATTGA 1569 0.4257 MENPCEVLGSKGLIRRHEFVRIIIQCLYSLGYSNSASCLELESGVSYKSNELKLLESLILNGNWEDSIEYLNSIQDVLGETRESAMFLVFRQCVMEYLNCGEDALALGVLRKQVSALDVDNCKVHSLAMCLLSFKDRELGGIGDDDVVVRDLRRKLIADLENLLPPPISLPEARLEHLVESTVTAWVDSCMYHSSSNRLSLYEDHCCSRDQIPTRTTQILTGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVLEDGILTLKHTLNGHQHAVSFVAWSPDDTKLLTCGNTEVLKLWDVETGTCKHTFGNQGFVVSSCAWFPNSKQFACGSSDPEKGVCMWDCDGNVIKSWRGMRMPKVVDLAVTPDGEYLISIFMDKEIRILHMGTNAERVISEEHPITSLSVSGDSKFFIVNLNSQEIHMWDVAGKWDKPSRFTGHKQHKYVIRSCFGGLNNTFIASGSENSQVYIWNCRNPTPIEVLSGHSMTVNCVSWNPKIPQMLASASDDYTIRIWGPSFLKMGMPN 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03024 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
Spst1g03024 522 PANTHER WD REPEAT PROTEIN 26-RELATED 3 514 - -
Spst1g03024 522 ProSiteProfiles LIS1 homology (LisH) motif profile. 15 47 IPR006594 GO:0005515
Spst1g03024 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 253 - -
Spst1g03024 522 SMART Lish 15 47 IPR006594 GO:0005515
Spst1g03024 522 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 48 105 IPR006595 -
Spst1g03024 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 253 IPR001680 GO:0005515
Spst1g03024 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 301 - -
Spst1g03024 522 FunFam WD repeat-containing protein 26 homolog 207 512 - -
Spst1g03024 522 SMART WD40_4 343 383 IPR001680 GO:0005515
Spst1g03024 522 SMART WD40_4 385 423 IPR001680 GO:0005515
Spst1g03024 522 SMART WD40_4 213 252 IPR001680 GO:0005515
Spst1g03024 522 SMART WD40_4 472 512 IPR001680 GO:0005515
Spst1g03024 522 SMART WD40_4 300 341 IPR001680 GO:0005515
Spst1g03024 522 SMART WD40_4 427 469 IPR001680 GO:0005515
Spst1g03024 522 SMART WD40_4 258 297 IPR001680 GO:0005515
Spst1g03024 522 SUPERFAMILY WD40 repeat-like 210 511 IPR036322 GO:0005515
Spst1g03024 522 Pfam WD domain, G-beta repeat 475 511 IPR001680 GO:0005515
Spst1g03024 522 Pfam WD domain, G-beta repeat 216 252 IPR001680 GO:0005515
Spst1g03024 522 Pfam WD domain, G-beta repeat 261 297 IPR001680 GO:0005515
Spst1g03024 522 Pfam WD domain, G-beta repeat 301 340 IPR001680 GO:0005515
Spst1g03024 522 Pfam WD domain, G-beta repeat 433 469 IPR001680 GO:0005515
Spst1g03024 522 SMART ctlh 48 105 IPR006595 -
Spst1g03024 522 CDD WD40 217 511 - -
Spst1g03024 522 Gene3D - 206 513 IPR015943 GO:0005515
Spst1g03024 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 479 511 IPR001680 GO:0005515
Spst1g03024 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 479 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03024 Spst-Chr1 38879241 38884347 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03024 215 371 Miscellaneous Gene Families AT5G08390 29.299 9.14e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03024 K22382 - gmx:100818922 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03024 1 38879241 38884347 Spst1g03024 1 38879241 38884347 ECH