Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03022 ATGTCCCGTGATTGTGAAAACACGGTTGTGGGGTGTGGAGCGGTGTCGGTGGATTTCTTGGCTACTGTTGCAGCTTTTCCGAAACCAGATGCCAAAATCAGAAGCACTTCCTTCAAGGTTCAAGGAGGTGGAAACGCAGGCAATGCCTTAACCTGTGCCTCTCGCTTAGGCCTCAAACCAAGACTAATTTCCAAGGTTGCAGGTGATACTCAAGGCCGGGATATATTACGTGAGCTACAGGTTGATGGGGTAGACACATCCTTCATGGCTGTTTCTCAGGAGGGCATTTCACCATTTACGTATGTCATTGTGGATAGCCAAACTATGTCCCGTACTTGTATACACACCCCTGGATTTCCACCAATGAAGCCAGTTGATCTTCCTATGTCAAGTTTACTAACTGTATTGAATGGAGCAAGAATTGTTTATTTTGATGGGAGATTGCATGAAACAGCTCTAGTTGTTGCACATGAGGCAGTTAAGAAGAATATACCTATCCTAATGGATGCAGAAAGGCTGAGAGAAGGGTTGGATGATCTCCTGAAATTATCAGATTATGTTGTGTGTTCTGCACAGTTTCCACAGGTATGGACAGAGGCATCAACAGTTCCTAAAGCACTAGTTTGTATGCTTTTAAGGTTGTCCAACATCAAATTTGTGATTGTAACTTTGGGAAAAGATGGGTGCATAATGCTTGAGAGAAGTGTTAATGAGGATCCTTCTGCTGAAGAAGTGGACGTTGACCAATTACTGGAATCCCTAGAGATAAGAAAGAACAGTACCACACACATCCCAACCTGCATATCATCATCAGTGAAAAAATTGCATACTGAAGGTATAGGAACGGTTTTTGGCAAGTTATATGTTGGAACAGCTGAGAACATACCACCATCAGAGCTTATTGATACAACTGGTGCTGGAGATGCATTTATTGGAGCTGTTATCTATGCTATCTGTGCCAACTTCACGCCAGAGAAAATGCTGTGCTTTGCTGCTACTGTGGCTGCTTCCAAGTGCAGAGCTATAGGAGCAAGAACTGGTCTCCCTTACCACACGGATCCATGTCTGGCATCCTTCACGCATTAG 1086 0.4392 MSRDCENTVVGCGAVSVDFLATVAAFPKPDAKIRSTSFKVQGGGNAGNALTCASRLGLKPRLISKVAGDTQGRDILRELQVDGVDTSFMAVSQEGISPFTYVIVDSQTMSRTCIHTPGFPPMKPVDLPMSSLLTVLNGARIVYFDGRLHETALVVAHEAVKKNIPILMDAERLREGLDDLLKLSDYVVCSAQFPQVWTEASTVPKALVCMLLRLSNIKFVIVTLGKDGCIMLERSVNEDPSAEEVDVDQLLESLEIRKNSTTHIPTCISSSVKKLHTEGIGTVFGKLYVGTAENIPPSELIDTTGAGDAFIGAVIYAICANFTPEKMLCFAATVAASKCRAIGARTGLPYHTDPCLASFTH 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03022 361 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 302 315 IPR002173 GO:0016301
Spst1g03022 361 Gene3D - 7 346 IPR029056 -
Spst1g03022 361 PRINTS Ribokinase signature 38 57 IPR002139 GO:0016301
Spst1g03022 361 PRINTS Ribokinase signature 220 231 IPR002139 GO:0016301
Spst1g03022 361 PRINTS Ribokinase signature 11 32 IPR002139 GO:0016301
Spst1g03022 361 Pfam pfkB family carbohydrate kinase 292 349 IPR011611 -
Spst1g03022 361 Pfam pfkB family carbohydrate kinase 9 235 IPR011611 -
Spst1g03022 361 CDD ribokinase_group_B 9 350 - -
Spst1g03022 361 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 6 360 - -
Spst1g03022 361 SUPERFAMILY Ribokinase-like 8 351 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03022 Spst-Chr1 38862876 38867347 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03022 - - ccaj:109795876 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03022 1 38862876 38867347 Spst1g03022 1 38862876 38867347 ECH
Spst1g03022 1 38862876 38867347 Spst7g00693 7 6837588 6842785 PCT