Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02986 ATGGCCATAACAGCCGCCATTTCCGTTCCTCTCACATCCCCCACGCGCCGCACTTTCGCCTTCCTCAATAATCTCTTCCCCCACACTCCCAGATCCACTCTGCCCACACCGCCACGCACCTTTAAATACCCTAATTCCCGCCTCGTCGTCTCCTCCATGAGCACCGACGCCCCCGTCAAAACCCCCTCGGCTTCCTTCCTCCATAGCCGAGAGACCGGCTTTCTCCATTTCGCCAAGTACCACGGCCTTGGAAACGACTTTGTTTTGATTGACAACAGAGACTCGTCCGAGCCCAGGATCAGTCCGGAGAAAGCGGTGCAACTGTGTGATCGGAACTTCGGTGTTGGAGCTGACGGAGTTATCTTTGTATTGCCTGGCATCAATGGCACTGATTATACCATGCGGATTTTTAACTCTGATGGTAGTGAGCCCGAGATGTGTGGTAATGGAGTGCGATGCTTTGCCAAATTCGTTTCTCAGCTTGAGAATTTACAAGGAAGCCATAGTTTCACAGTACATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTAGATAATGGAAATGTCAGAGTTGACATGGGGGAACCTGTTCTTAAAGCCTCAGATGTGCCTACCAAATTACCTGCAAACAAGGATAATGCTGTTGTTAAATCGGAGCTCATTGTAGATGGAGTTATCTGGCATGTGACCTGTGTTAGCATGGGAAATCCACACTGTGTAACTTTCAGTAGAGAAGGAAGCCAGAATTTGCTTGTTGATGAATTGAAGCTAGCAGAAATTGGCCCAAAATTTGAACATCACGAGGTGTTCCCAGCACGAACTAACACAGAGTTTGTGCAAGTATTGTCTAACTCTCACCTGAAAATGCGTGTTTGGGAGCGGGGAGCAGGAGCAACCCTAGCCTGTGGAACTGGAGCTTGTGCTACTGTTGTTGCCGCCATTCTTGAGGGTCGTGCTGGGAGGAATTGCACGGTTGATCTACCTGGAGGGCCTCTTCAGATTGAGTGGATGGAGGAAGATAATCATGTGTATATGACAGGCTCAGCCGATGTAGTTTATTACGGATCTTTGCCTCTTTGA 1080 0.488 MAITAAISVPLTSPTRRTFAFLNNLFPHTPRSTLPTPPRTFKYPNSRLVVSSMSTDAPVKTPSASFLHSRETGFLHFAKYHGLGNDFVLIDNRDSSEPRISPEKAVQLCDRNFGVGADGVIFVLPGINGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLQGSHSFTVHTGAGLIIPEVLDNGNVRVDMGEPVLKASDVPTKLPANKDNAVVKSELIVDGVIWHVTCVSMGNPHCVTFSREGSQNLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACATVVAAILEGRAGRNCTVDLPGGPLQIEWMEEDNHVYMTGSADVVYYGSLPL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02986 359 Pfam Diaminopimelate epimerase 231 351 IPR001653 GO:0008837|GO:0009089
Spst1g02986 359 Pfam Diaminopimelate epimerase 77 198 IPR001653 GO:0008837|GO:0009089
Spst1g02986 359 SUPERFAMILY Diaminopimelate epimerase-like 218 357 - -
Spst1g02986 359 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 209 343 - -
Spst1g02986 359 NCBIfam diaminopimelate epimerase 76 357 IPR001653 GO:0008837|GO:0009089
Spst1g02986 359 Hamap Diaminopimelate epimerase [dapF]. 75 359 IPR001653 GO:0008837|GO:0009089
Spst1g02986 359 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 49 205 - -
Spst1g02986 359 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 64 358 IPR001653 GO:0008837|GO:0009089
Spst1g02986 359 FunFam Diaminopimelate epimerase chloroplastic 199 346 - -
Spst1g02986 359 ProSitePatterns Diaminopimelate epimerase signature. 138 152 IPR018510 GO:0005737|GO:0008837|GO:0009089
Spst1g02986 359 SUPERFAMILY Diaminopimelate epimerase-like 75 204 - -
Spst1g02986 359 FunFam Diaminopimelate epimerase, chloroplastic 49 198 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02986 K01778 - gmx:100784731 658.677