Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02976 ATGGATTATCACCATCATCATCTTCGCCACCACCACCACCACCATCATCGTAAGCCTCACGTCCCTCTCTCCGAACCCACCACCCCCACCACCCAGAGCCCCACCTTCTTCCTCTCCACCTCCGGGAAGGCCCTCCTTCTCTCCAACTCCAACAAGTCCCTCCTTCTCCTCTCCAACTCCGCCAAACGCCTCGACATCCCCCTCAAGAAATATGTCAAACAGGTCACCGGCCGCCACAATGACACCGAGATCCACCTCGCTGCCCAGCGCGGAGACCTCGCCACCGTCCGCAACATCATCGCCGAGATCGACTCCATCATGATTGGGTCCTTCGAGTTCGACGCCGAGGTTGCCCACATGAGGTCCACCATCATCAACGAGGTCAACGACCTCGGCGAAACCGCTCTCTTCACCGCCGCAGAAAAGGGTCACCTCGACGTCGTCCGCGAGCTCCTCCCTCACTCCACCGGCGAAGCCCTTTCCTCCAAAAACCGCTCCGGCTTTGACACCTTGCACATTGCTGCTAGCAAAGGTCATCTTGCCATTGTGCAGGTGCTACTAGACCATGAGCCTGGGCTGATTAAGACGTTTGCGCAGTCAAATGCAACTCCTCTAATATCTGCAGCTACACGAGGGCACGCGGATGTTGTTGAAGAGTTGTTGTCTCGGGATCCTACTCAGTTGGAGATGACAAGGTCCAATGGAAAGAATGCTCTCCATTTAGCCGCACGGCAGGGACATGTGGATGTTGTGAAGATACTGCTACGGAAGGATCCACAACTTGCTCGAAGGACAGATAAGAAAGGACAAACTGCACTACACATGGCTGTCAAAGGGATTAGTTGCGAAGTGGTGAAGCTCATTCTGGCTGCGGATGTAGCCATTGTCATGCTTCCTGACAGGTTTGGCAATACTGCATTGCATATAGCCACAAGGAAGAAGAGGACAGAGATAGTGAATGAGCTGGTACTTCTTCCTGACACCAACGTAAATACCTTGACAAAAGACAACAAGACAGCTCTAGACCTTGCAGAGGGGCTTCCAATATCTGAAGAAATTCTAGAGATCAAAGACTGTCTGATTCGTTATGGCACAGTCAAAGCCAACGATCTCAACCAACCAAGGGATGAGCTAAGGAAAACCATGACACAAATTAAGAAGGATGTCTATTTTCAGCTGGAACAAACTAGAAAAACAAACAAGAATGTAAGTGGGATTGAAAATGAGCTACGGAAGTTGCACAGGGATGGAGTCAACAATGCTGCCAACTCAGTAACGGTGGTTGCTGTGCTATTTGCAGCAGGCGCATTTGCAGCACTCTTCACAGTTCCTGGTGGGGATTATGATAATGGGATGGCAGTGATGGTACACTCTGCACCTTTCAAAGCCTTCTTCATATCTAATGCCCTGTCACTATTTACGTCATTAGCAGTGGTGGTGGTTCAAATCACCCTAGTTAGGGGGGAGGTAAAGACCGAGAGAAAGGTTGTGGAGGTGATCAACAAGATGATGTGGTTAGCCTCTGTATGCACTTCTGTTTCATTCAGTACAGCATCTTATATAGTAGTTGGTCGACACAGCCAGTGGGCTGCCATACTTGTTACAGTTGTAGGGGGGATCGTAATGAGTGGTGTTCTTGGTACCATGACATACTATGTGGTCAAATCCAAACGCGCCCGAAGAGAGAGGAAGAAAGAGAAAGAGAAGAAATCTAAGATGGGAGGAATACACACGCGGCGTCTTTCGAATTCTGATGACTCAGAAATAAATCCAATCTATGCCATCTGA 1788 0.4966 MDYHHHHLRHHHHHHHRKPHVPLSEPTTPTTQSPTFFLSTSGKALLLSNSNKSLLLLSNSAKRLDIPLKKYVKQVTGRHNDTEIHLAAQRGDLATVRNIIAEIDSIMIGSFEFDAEVAHMRSTIINEVNDLGETALFTAAEKGHLDVVRELLPHSTGEALSSKNRSGFDTLHIAASKGHLAIVQVLLDHEPGLIKTFAQSNATPLISAATRGHADVVEELLSRDPTQLEMTRSNGKNALHLAARQGHVDVVKILLRKDPQLARRTDKKGQTALHMAVKGISCEVVKLILAADVAIVMLPDRFGNTALHIATRKKRTEIVNELVLLPDTNVNTLTKDNKTALDLAEGLPISEEILEIKDCLIRYGTVKANDLNQPRDELRKTMTQIKKDVYFQLEQTRKTNKNVSGIENELRKLHRDGVNNAANSVTVVAVLFAAGAFAALFTVPGGDYDNGMAVMVHSAPFKAFFISNALSLFTSLAVVVVQITLVRGEVKTERKVVEVINKMMWLASVCTSVSFSTASYIVVGRHSQWAAILVTVVGGIVMSGVLGTMTYYVVKSKRARRERKKEKEKKSKMGGIHTRRLSNSDDSEINPIYAI 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02976 595 ProSiteProfiles Ankyrin repeat profile. 166 189 IPR002110 GO:0005515
Spst1g02976 595 Pfam Domain of unknown function 417 522 IPR026961 -
Spst1g02976 595 SUPERFAMILY Ankyrin repeat 84 347 IPR036770 -
Spst1g02976 595 Gene3D - 192 389 IPR036770 -
Spst1g02976 595 ProSiteProfiles Ankyrin repeat region circular profile. 234 257 - -
Spst1g02976 595 MobiDBLite consensus disorder prediction 1 20 - -
Spst1g02976 595 Pfam Ankyrin repeats (3 copies) 205 293 IPR002110 GO:0005515
Spst1g02976 595 Pfam Ankyrin repeats (3 copies) 84 189 IPR002110 GO:0005515
Spst1g02976 595 MobiDBLite consensus disorder prediction 568 584 - -
Spst1g02976 595 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 53 571 - -
Spst1g02976 595 SMART ANK_2a 234 263 IPR002110 GO:0005515
Spst1g02976 595 SMART ANK_2a 268 297 IPR002110 GO:0005515
Spst1g02976 595 SMART ANK_2a 302 332 IPR002110 GO:0005515
Spst1g02976 595 SMART ANK_2a 200 229 IPR002110 GO:0005515
Spst1g02976 595 SMART ANK_2a 166 195 IPR002110 GO:0005515
Spst1g02976 595 SMART ANK_2a 79 108 IPR002110 GO:0005515
Spst1g02976 595 SMART ANK_2a 131 161 IPR002110 GO:0005515
Spst1g02976 595 MobiDBLite consensus disorder prediction 562 590 - -
Spst1g02976 595 MobiDBLite consensus disorder prediction 1 34 - -
Spst1g02976 595 ProSiteProfiles Ankyrin repeat profile. 234 266 IPR002110 GO:0005515
Spst1g02976 595 ProSiteProfiles Ankyrin repeat profile. 131 163 IPR002110 GO:0005515
Spst1g02976 595 Pfam Ankyrin repeat 303 331 IPR002110 GO:0005515
Spst1g02976 595 ProSiteProfiles Ankyrin repeat region circular profile. 166 189 - -
Spst1g02976 595 FunFam Ankyrin repeat-containing protein ITN1 54 192 - -
Spst1g02976 595 Gene3D - 58 191 IPR036770 -
Spst1g02976 595 FunFam Ankyrin repeat-containing protein ITN1 227 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02976 Spst-Chr1 38294213 38296951 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02976 24 595 Miscellaneous Gene Families AT3G09550 68.367 0.0 779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02976 - - gmx:100801840 888.641