Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02964 ATGCCTCGCTATGATGATAAATATGGCAATACCCGTCTCTACGTAGGACGCCTGTCTTCGGACACCCGGTCCCGTGATCTTGAGCGAGTCTTCAGCAGATATGGAAGAGTTCGAGGGGTGGATATGAAGAATGATTTCGCCTTTGTTGAATTTAGCGATCCTCGAGATGCTGATGATGCTAGATATAACTTGGATGGCCGTGACTTTGAAGGAAGTCGCATTATTGTTGAATTTGCCAAGGGGGGTCCTCGTGGTTCCCGGGAATACGTGGGTCGGGGTCCACCTCCTGGATCTGGACGATGCTTTAACTGTGGAATTGATGGTCATTGGGCCCGAGATTGCAAAGCTGGGGATTGGAAGAACAAATGCTACCGCTGTGGGGAAAGAGGTCATATAGAGAAGAACTGCAAGAACAGTCCCAAAAAGTTGAGCAGCAGGTGTGGACGGAGTCTTTCAAGGTCACCAGTCAGGTCGAGGTCAAGGTCTCCTCGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCGGTGACCGCAGCTACAGTCGATCGAGGTCTCCAGTCAGAAGAGAGAGAAGCCCTATTTCCGAAGATAGGTCACGGAGTCCTAGGCCCTCCAAGATAAGGAGGCATAGTGGATCACCTGACCGTAGCAGCCCACAGAAGAGAGGTGACACATTTCCTGGTAATGGTGATAGGTTGGTCACTCAGCGAGATGGGTCTGAGTTCAGTGATGGTCCTAGAGGCAAGAGTAGAAGCCCTGCCAGTCCTGCAAGGGACGGCAATGAGTATGGCTATGATATCCCTAAAACTAATGGGCGTAGCCGGAGCCCTAGGGAGGATGACAGGAGCCCCATTGATGAAGATGATGGCAACCATCGCCGCTCACAGTCACCTTAG 894 0.5168 MPRYDDKYGNTRLYVGRLSSDTRSRDLERVFSRYGRVRGVDMKNDFAFVEFSDPRDADDARYNLDGRDFEGSRIIVEFAKGGPRGSREYVGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSSRCGRSLSRSPVRSRSRSPRRGRSRDRSYSGDRSYSRSRSPVRRERSPISEDRSRSPRPSKIRRHSGSPDRSSPQKRGDTFPGNGDRLVTQRDGSEFSDGPRGKSRSPASPARDGNEYGYDIPKTNGRSRSPREDDRSPIDEDDGNHRRSQSP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02964 297 MobiDBLite consensus disorder prediction 167 216 - -
Spst1g02964 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Spst1g02964 297 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Spst1g02964 297 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 91 119 - -
Spst1g02964 297 FunFam Serine/arginine-rich splicing factor RS2Z32 3 86 - -
Spst1g02964 297 Gene3D - 91 118 - -
Spst1g02964 297 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Spst1g02964 297 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Spst1g02964 297 MobiDBLite consensus disorder prediction 141 157 - -
Spst1g02964 297 Gene3D - 119 151 - -
Spst1g02964 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Spst1g02964 297 MobiDBLite consensus disorder prediction 134 297 - -
Spst1g02964 297 Gene3D - 3 89 IPR012677 -
Spst1g02964 297 SMART rrm1_1 12 77 IPR000504 GO:0003723
Spst1g02964 297 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Spst1g02964 297 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Spst1g02964 297 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 11 199 - -
Spst1g02964 297 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Spst1g02964 297 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Spst1g02964 297 MobiDBLite consensus disorder prediction 271 297 - -
Spst1g02964 297 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02964 Spst-Chr1 38201731 38204346 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02964 K12896 - gmx:100813237 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02964 1 38201731 38204346 Spst1g02964 1 38201731 38204346 ECH